damned Catalina

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks
On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/> 
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno 

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno 

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is 

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
	[[alternative HTML version deleted]]

_______________________________________________
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R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org> <mailto:R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>

	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
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https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email: ? ? ?Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch
		Rainer at krugs.de
Skype:     RMkrug

PGP: 0x0F52F982
Do you mean that it does not work locally on my computer, but only in the cloud?
Thanks for the collaboration

Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/> 
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno 

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno 

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is 

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org> <mailto:R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>

	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email: ? ? ?Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email: ? ? ?Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

   install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch
Thanks for the collaboration

Bruno

Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org> <mailto:R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>

	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
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https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email: ? ? ?Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email: ? ? ?Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Thanks for the clarification. I did it, but with the same result
install.packages("regtools", repo = "https://cloud.r-project.org")
Installing package into ?/Users/blapo_nuovo/Library/R/3.6/library?
Warning: unable to access index for repository https://cloud.r-project.org/src/contrib:
Warning: unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
Warning message:
package ?regtools? is not available (for R version 3.6.2) 

Cave Catalina!  Me too have no problem with el-captain.

Bruno
Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch <murdoch.duncan at gmail.com> ha scritto:

On 18/12/2019 8:43 a.m., bruno apolloni wrote:
Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

 install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch

Thanks for the collaboration
Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
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--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

	[[alternative HTML version deleted]]
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Hmm, my best guess is that file downloads are failing somehow. It's not like, e.g.,

https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz

is not on the website. 

Time to get scientific: Try putting a debug(download.file) and/or debug(available.packages), retry the install (or maybe just do available.packages(repos=....)), and single-step through the call to see where it goes wrong. One possibility is that you don't have write permission for the directory that it wants to download into, so figure out what the exact target is.

-pd
On 18 Dec 2019, at 16:05 , bruno apolloni <apolloni at di.unimi.it> wrote:

Thanks for the clarification. I did it, but with the same result

install.packages("regtools", repo = "https://cloud.r-project.org")
Installing package into ?/Users/blapo_nuovo/Library/R/3.6/library?
Warning: unable to access index for repository https://cloud.r-project.org/src/contrib:
Warning: unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
Warning message:
package ?regtools? is not available (for R version 3.6.2) 

Cave Catalina!  Me too have no problem with el-captain.

Bruno

Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch <murdoch.duncan at gmail.com> ha scritto:

On 18/12/2019 8:43 a.m., bruno apolloni wrote:
Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch

Thanks for the collaboration
Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
	[[alternative HTML version deleted]]

_______________________________________________
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R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org> <mailto:R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>

	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

	[[alternative HTML version deleted]]
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com
Something else changed on your system as Catalina does no domain/IP/URL blocking without user-intervention and those repo URLs work fine on all my (many) Catalina systems.

What else changed after you did the Catalina install?

There's a great deal wrong with Catalina, this is not one of those things.
On Dec 18, 2019, at 10:43, peter dalgaard <pdalgd at gmail.com> wrote:

Hmm, my best guess is that file downloads are failing somehow. It's not like, e.g.,

https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz

is not on the website. 

Time to get scientific: Try putting a debug(download.file) and/or debug(available.packages), retry the install (or maybe just do available.packages(repos=....)), and single-step through the call to see where it goes wrong. One possibility is that you don't have write permission for the directory that it wants to download into, so figure out what the exact target is.

-pd

On 18 Dec 2019, at 16:05 , bruno apolloni <apolloni at di.unimi.it> wrote:

Thanks for the clarification. I did it, but with the same result

install.packages("regtools", repo = "https://cloud.r-project.org")
Installing package into ?/Users/blapo_nuovo/Library/R/3.6/library?
Warning: unable to access index for repository https://cloud.r-project.org/src/contrib:
Warning: unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
Warning message:
package ?regtools? is not available (for R version 3.6.2) 

Cave Catalina!  Me too have no problem with el-captain.

Bruno

Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch <murdoch.duncan at gmail.com> ha scritto:

On 18/12/2019 8:43 a.m., bruno apolloni wrote:
Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch

Thanks for the collaboration
Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org> <mailto:R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>

	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

	[[alternative HTML version deleted]]
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Ok, I surrend!

Waiting for necessary patches by Apple, for the moment I?m comfortably running R on a Windows system.

Thanks for all.

Bruno
Il giorno 18 dic 2019, alle ore 16:46, Bob Rudis <bob at rud.is> ha scritto:

Something else changed on your system as Catalina does no domain/IP/URL blocking without user-intervention and those repo URLs work fine on all my (many) Catalina systems.

What else changed after you did the Catalina install?

There's a great deal wrong with Catalina, this is not one of those things.

On Dec 18, 2019, at 10:43, peter dalgaard <pdalgd at gmail.com> wrote:

Hmm, my best guess is that file downloads are failing somehow. It's not like, e.g.,

https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz

is not on the website. 

Time to get scientific: Try putting a debug(download.file) and/or debug(available.packages), retry the install (or maybe just do available.packages(repos=....)), and single-step through the call to see where it goes wrong. One possibility is that you don't have write permission for the directory that it wants to download into, so figure out what the exact target is.

-pd

On 18 Dec 2019, at 16:05 , bruno apolloni <apolloni at di.unimi.it> wrote:

Thanks for the clarification. I did it, but with the same result

install.packages("regtools", repo = "https://cloud.r-project.org")
Installing package into ?/Users/blapo_nuovo/Library/R/3.6/library?
Warning: unable to access index for repository https://cloud.r-project.org/src/contrib:
Warning: unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
Warning message:
package ?regtools? is not available (for R version 3.6.2) 

Cave Catalina!  Me too have no problem with el-captain.

Bruno

Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch <murdoch.duncan at gmail.com> ha scritto:

On 18/12/2019 8:43 a.m., bruno apolloni wrote:
Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch

Thanks for the collaboration
Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
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--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

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-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

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Bruno, I doubt Apple is going to patch anything because the problem seems to be either on your computer or on your network. 

It smells to me that for example your host file, or something else, has been modified, or something in your network has also change that is blocking your access to that repository for some reason. 

I'm also on Catalina and as the rest I can access that repo on the browser, or any other, without a trouble. 

Anyhow, if you really think that the problem is on Apple side, you should contact them if you really expect them to produce any fix. 

Best of the lucks! 

Cheers!
Luis
On 19 Dec 2019, at 18:50, bruno apolloni <apolloni at di.unimi.it> wrote:

Ok, I surrend!

Waiting for necessary patches by Apple, for the moment I?m comfortably running R on a Windows system.

Thanks for all.

Bruno

Il giorno 18 dic 2019, alle ore 16:46, Bob Rudis <bob at rud.is> ha scritto:

Something else changed on your system as Catalina does no domain/IP/URL blocking without user-intervention and those repo URLs work fine on all my (many) Catalina systems.

What else changed after you did the Catalina install?

There's a great deal wrong with Catalina, this is not one of those things.

On Dec 18, 2019, at 10:43, peter dalgaard <pdalgd at gmail.com> wrote:

Hmm, my best guess is that file downloads are failing somehow. It's not like, e.g.,

https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz

is not on the website. 

Time to get scientific: Try putting a debug(download.file) and/or debug(available.packages), retry the install (or maybe just do available.packages(repos=....)), and single-step through the call to see where it goes wrong. One possibility is that you don't have write permission for the directory that it wants to download into, so figure out what the exact target is.

-pd

On 18 Dec 2019, at 16:05 , bruno apolloni <apolloni at di.unimi.it> wrote:

Thanks for the clarification. I did it, but with the same result

install.packages("regtools", repo = "https://cloud.r-project.org")
Installing package into ?/Users/blapo_nuovo/Library/R/3.6/library?
Warning: unable to access index for repository https://cloud.r-project.org/src/contrib:
Warning: unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
Warning message:
package ?regtools? is not available (for R version 3.6.2) 

Cave Catalina!  Me too have no problem with el-captain.

Bruno

Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch <murdoch.duncan at gmail.com> ha scritto:

On 18/12/2019 8:43 a.m., bruno apolloni wrote:
Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch

Thanks for the collaboration
Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
	[[alternative HTML version deleted]]

_______________________________________________
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R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org> <mailto:R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>

	[[alternative HTML version deleted]]

_______________________________________________
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--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

	[[alternative HTML version deleted]]
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
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https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Maybe, dear Luis.

All the best

Bruno
Il giorno 19 dic 2019, alle ore 20:45, Luis Puerto <luiss.puerto at gmail.com> ha scritto:

Bruno, I doubt Apple is going to patch anything because the problem seems to be either on your computer or on your network. 

It smells to me that for example your host file, or something else, has been modified, or something in your network has also change that is blocking your access to that repository for some reason. 

I'm also on Catalina and as the rest I can access that repo on the browser, or any other, without a trouble. 

Anyhow, if you really think that the problem is on Apple side, you should contact them if you really expect them to produce any fix. 

Best of the lucks! 

Cheers!
Luis

On 19 Dec 2019, at 18:50, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Ok, I surrend!

Waiting for necessary patches by Apple, for the moment I?m comfortably running R on a Windows system.

Thanks for all.

Bruno

Il giorno 18 dic 2019, alle ore 16:46, Bob Rudis <bob at rud.is <mailto:bob at rud.is>> ha scritto:

Something else changed on your system as Catalina does no domain/IP/URL blocking without user-intervention and those repo URLs work fine on all my (many) Catalina systems.

What else changed after you did the Catalina install?

There's a great deal wrong with Catalina, this is not one of those things.

On Dec 18, 2019, at 10:43, peter dalgaard <pdalgd at gmail.com <mailto:pdalgd at gmail.com>> wrote:

Hmm, my best guess is that file downloads are failing somehow. It's not like, e.g.,

https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz <https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz>

is not on the website. 

Time to get scientific: Try putting a debug(download.file) and/or debug(available.packages), retry the install (or maybe just do available.packages(repos=....)), and single-step through the call to see where it goes wrong. One possibility is that you don't have write permission for the directory that it wants to download into, so figure out what the exact target is.

-pd

On 18 Dec 2019, at 16:05 , bruno apolloni <apolloni at di.unimi.it> wrote:

Thanks for the clarification. I did it, but with the same result

install.packages("regtools", repo = "https://cloud.r-project.org")
Installing package into ?/Users/blapo_nuovo/Library/R/3.6/library?
Warning: unable to access index for repository https://cloud.r-project.org/src/contrib:
Warning: unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
Warning message:
package ?regtools? is not available (for R version 3.6.2) 

Cave Catalina!  Me too have no problem with el-captain.

Bruno

Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch <murdoch.duncan at gmail.com> ha scritto:

On 18/12/2019 8:43 a.m., bruno apolloni wrote:
Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch

Thanks for the collaboration
Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
	[[alternative HTML version deleted]]

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R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org> <mailto:R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>

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_______________________________________________
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https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

	[[alternative HTML version deleted]]
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

_______________________________________________
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R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
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R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

The antivirus kaspersky blocks the direct connection to the cloud repo. Removed antivirus -> install.packages() works.

Thanks for all

Bruno
Il giorno 19 dic 2019, alle ore 21:54, bruno apolloni <apolloni at di.unimi.it> ha scritto:

Maybe, dear Luis.

All the best

Bruno

Il giorno 19 dic 2019, alle ore 20:45, Luis Puerto <luiss.puerto at gmail.com> ha scritto:

Bruno, I doubt Apple is going to patch anything because the problem seems to be either on your computer or on your network. 

It smells to me that for example your host file, or something else, has been modified, or something in your network has also change that is blocking your access to that repository for some reason. 

I'm also on Catalina and as the rest I can access that repo on the browser, or any other, without a trouble. 

Anyhow, if you really think that the problem is on Apple side, you should contact them if you really expect them to produce any fix. 

Best of the lucks! 

Cheers!
Luis

On 19 Dec 2019, at 18:50, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Ok, I surrend!

Waiting for necessary patches by Apple, for the moment I?m comfortably running R on a Windows system.

Thanks for all.

Bruno

Il giorno 18 dic 2019, alle ore 16:46, Bob Rudis <bob at rud.is <mailto:bob at rud.is>> ha scritto:

Something else changed on your system as Catalina does no domain/IP/URL blocking without user-intervention and those repo URLs work fine on all my (many) Catalina systems.

What else changed after you did the Catalina install?

There's a great deal wrong with Catalina, this is not one of those things.

On Dec 18, 2019, at 10:43, peter dalgaard <pdalgd at gmail.com <mailto:pdalgd at gmail.com>> wrote:

Hmm, my best guess is that file downloads are failing somehow. It's not like, e.g.,

https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz <https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz>

is not on the website. 

Time to get scientific: Try putting a debug(download.file) and/or debug(available.packages), retry the install (or maybe just do available.packages(repos=....)), and single-step through the call to see where it goes wrong. One possibility is that you don't have write permission for the directory that it wants to download into, so figure out what the exact target is.

-pd

On 18 Dec 2019, at 16:05 , bruno apolloni <apolloni at di.unimi.it> wrote:

Thanks for the clarification. I did it, but with the same result

install.packages("regtools", repo = "https://cloud.r-project.org")
Installing package into ?/Users/blapo_nuovo/Library/R/3.6/library?
Warning: unable to access index for repository https://cloud.r-project.org/src/contrib:
Warning: unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
Warning message:
package ?regtools? is not available (for R version 3.6.2) 

Cave Catalina!  Me too have no problem with el-captain.

Bruno

Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch <murdoch.duncan at gmail.com> ha scritto:

On 18/12/2019 8:43 a.m., bruno apolloni wrote:
Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch

Thanks for the collaboration
Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
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--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

	[[alternative HTML version deleted]]
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

_______________________________________________
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https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
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I am not getting any error with Catalina 10.15.2
install.packages("regtools", repo = "https://cloud.r-project.org")
also installing the dependency ?dummies?

trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/dummies_1.5.6.tgz'
Content type 'application/x-gzip' length 27294 bytes (26 KB)
==================================================
downloaded 26 KB

trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/regtools_1.1.0.tgz'
Content type 'application/x-gzip' length 1596328 bytes (1.5 MB)
==================================================
downloaded 1.5 MB

The downloaded binary packages are in
	/var/folders/y3/5z1skj6s5tq0pktmsq6x80v80000gn/T//RtmpMKeXpC/downloaded_packages

System Software Overview:

  System Version:	macOS 10.15.2 (19C57)
  Kernel Version:	Darwin 19.2.0
  Boot Volume:	Macintosh HD
  Boot Mode:	Normal
  Computer Name:	prefect
  User Name:	R. Mark Sharp (msharp)
  Secure Virtual Memory:	Enabled
  System Integrity Protection:	Enabled
  Time since boot:	3 days 19:36

Model Name:	MacBook Pro
  Model Identifier:	MacBookPro11,3
  Processor Name:	Quad-Core Intel Core i7
  Processor Speed:	2.8 GHz
  Number of Processors:	1
  Total Number of Cores:	4
  L2 Cache (per Core):	256 KB
  L3 Cache:	6 MB
  Hyper-Threading Technology:	Enabled
  Memory:	16 GB
  Boot ROM Version:	157.0.0.0.0
  SMC Version (system):	2.19f12
  Serial Number (system):	C02NN2F0G3QP
  Hardware UUID:	5E2ECC0B-E7EC-5E58-97BB-2513010E6DA8

R. Mark Sharp, Ph.D.
Data Scientist and Biomedical Statistical Consultant
7526 Meadow Green St.
San Antonio, TX 78251
mobile: 210-218-2868
rmsharp at me.com
On Dec 21, 2019, at 12:31 PM, bruno apolloni <apolloni at di.unimi.it> wrote:

The antivirus kaspersky blocks the direct connection to the cloud repo. Removed antivirus -> install.packages() works.

Thanks for all

Bruno

Il giorno 19 dic 2019, alle ore 21:54, bruno apolloni <apolloni at di.unimi.it> ha scritto:

Maybe, dear Luis.

All the best

Bruno

Il giorno 19 dic 2019, alle ore 20:45, Luis Puerto <luiss.puerto at gmail.com> ha scritto:

Bruno, I doubt Apple is going to patch anything because the problem seems to be either on your computer or on your network. 

It smells to me that for example your host file, or something else, has been modified, or something in your network has also change that is blocking your access to that repository for some reason. 

I'm also on Catalina and as the rest I can access that repo on the browser, or any other, without a trouble. 

Anyhow, if you really think that the problem is on Apple side, you should contact them if you really expect them to produce any fix. 

Best of the lucks! 

Cheers!
Luis

On 19 Dec 2019, at 18:50, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Ok, I surrend!

Waiting for necessary patches by Apple, for the moment I?m comfortably running R on a Windows system.

Thanks for all.

Bruno

Il giorno 18 dic 2019, alle ore 16:46, Bob Rudis <bob at rud.is <mailto:bob at rud.is>> ha scritto:

Something else changed on your system as Catalina does no domain/IP/URL blocking without user-intervention and those repo URLs work fine on all my (many) Catalina systems.

What else changed after you did the Catalina install?

There's a great deal wrong with Catalina, this is not one of those things.

On Dec 18, 2019, at 10:43, peter dalgaard <pdalgd at gmail.com <mailto:pdalgd at gmail.com>> wrote:

Hmm, my best guess is that file downloads are failing somehow. It's not like, e.g.,

https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz <https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/PACKAGES.gz>

is not on the website. 

Time to get scientific: Try putting a debug(download.file) and/or debug(available.packages), retry the install (or maybe just do available.packages(repos=....)), and single-step through the call to see where it goes wrong. One possibility is that you don't have write permission for the directory that it wants to download into, so figure out what the exact target is.

-pd

On 18 Dec 2019, at 16:05 , bruno apolloni <apolloni at di.unimi.it> wrote:

Thanks for the clarification. I did it, but with the same result

install.packages("regtools", repo = "https://cloud.r-project.org")
Installing package into ?/Users/blapo_nuovo/Library/R/3.6/library?
Warning: unable to access index for repository https://cloud.r-project.org/src/contrib:
Warning: unable to access index for repository https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6:
Warning message:
package ?regtools? is not available (for R version 3.6.2) 

Cave Catalina!  Me too have no problem with el-captain.

Bruno

Il giorno 18 dic 2019, alle ore 15:52, Duncan Murdoch <murdoch.duncan at gmail.com> ha scritto:

On 18/12/2019 8:43 a.m., bruno apolloni wrote:
Do you mean that it does not work locally on my computer, but only in the cloud?
I think he meant

install.packages("regtools", repo = "https://cloud.r-project.org")

which works for me (but I'm not on Catalina, I'm still on High Sierra).

Duncan Murdoch

Thanks for the collaboration
Bruno
Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug <Rainer at krugs.de> ha scritto:

Just works out of the box, i.e. the cloud repo.

PS: please CC the list in - thanks

On 18 Dec 2019, at 14:34, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

I tried from many repo:

https://cran.r-project.org <https://cran.r-project.org/>
https://pbil.univ-lyon1.fr/CRAN/ <https://pbil.univ-lyon1.fr/CRAN/>
https://cran.stat.unipd.it <https://cran.stat.unipd.it/>
http://cran.mirror.garr.it/mirrors/CRAN/ <http://cran.mirror.garr.it/mirrors/CRAN/>

always with the same answer:

package ?regtools? is not available (for R version 3.6.2) .

Which URL you refer to? The above links are opened in Safari.

Thanks for your cooperation

Bruno

Il giorno 18 dic 2019, alle ore 13:41, Rainer M Krug <Rainer at krugs.de <mailto:Rainer at krugs.de>> ha scritto:

Also on Catalena: I can install without problems. Try a different repo? Can you open the URL in Safari?

Cheers,

Rainer

On 18 Dec 2019, at 13:32, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>> wrote:

Any help after the Ken answer?

Thanks a lot
Bruno

Inizio messaggio inoltrato:

Da: bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
Oggetto: Re: [R-SIG-Mac] damned Catalina
Data: 18 dicembre 2019 13:30:54 CET
A: Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>

Actually, in https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/> <https://cran.r-project.org/bin/macosx/ <https://cran.r-project.org/bin/macosx/>> I read;

For discussion of Mac-related topics and reporting Mac-specific bugs, please use the R-SIG-Mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>> mailing list.

Did something went wrong? Should I remove the first line of my mail?  Actually, what I need is to run ?regtools? on Cran R insalled on my computer. Thanks for your unsderstanding, all the best

Bruno

Bruno Apolloni
(Full Professor )
Dipartimento di Informatica
University of Milano
Via Comelico 39
20135 Milano (Italy)
Tel. +39(0)2-50316284
Fax. +39(0)2-50316228
Mobile +39 333 7469878
e-mail: apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>
http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni> <http://homes.di.unimi.it/apolloni <http://homes.di.unimi.it/apolloni>>

Il giorno 18 dic 2019, alle ore 13:08, Ken Beath <ken at kjbeath.com.au <mailto:ken at kjbeath.com.au> <mailto:ken at kjbeath.com.au <mailto:ken at kjbeath.com.au>>> ha scritto:

Try another repository. It works fine with the main CRAN and teh RStudio repositories.

Ken

On 18 Dec 2019, at 10:50 pm, bruno apolloni <apolloni at di.unimi.it <mailto:apolloni at di.unimi.it> <mailto:apolloni at di.unimi.it <mailto:apolloni at di.unimi.it>>> wrote:

Dear All

among disasters of the new operating system Catalina, this one concerns R.

Trying to install ?regtools"  the answer by Crane R consolle is

unable to access index for repository https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6> <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6 <https://cran.stat.unipd.it/bin/macosx/el-capitan/contrib/3.6>>>

The same  for ?devtools?. This happens on my Mac with Catalina OS. The same installation on same Crane R but  on a laptop of colleauge of mine endowed with previous OS (el captain) succeeds without any problem.

Any remedy to suggest?

Thanks a lot

Bruno
	[[alternative HTML version deleted]]

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org> <mailto:R-SIG-Mac at r-project.org <mailto:R-SIG-Mac at r-project.org>>
https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>

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_______________________________________________
R-SIG-Mac mailing list
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https://stat.ethz.ch/mailman/listinfo/r-sig-mac <https://stat.ethz.ch/mailman/listinfo/r-sig-mac>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Orcid ID: 0000-0002-7490-0066

Department of Evolutionary Biology and Environmental Studies
University of Z?rich
Office Y34-J-74
Winterthurerstrasse 190
8075 Z?rich
Switzerland

Office:	+41 (0)44 635 47 64
Cell:       	+41 (0)78 630 66 57
email:      Rainer.Krug at uzh.ch <mailto:Rainer.Krug at uzh.ch>
		Rainer at krugs.de <mailto:Rainer at krugs.de>
Skype:     RMkrug

PGP: 0x0F52F982

	[[alternative HTML version deleted]]
_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac at r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

_______________________________________________
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https://stat.ethz.ch/mailman/listinfo/r-sig-mac

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https://stat.ethz.ch/mailman/listinfo/r-sig-mac