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installing lme4.0 on OS X 10.9
4 messages · Cole, Tim, Roger Levy, Simon Urbanek
Roger does not seem to have a working Fortran compiler which is required for lme4. He may want to install one, e.g. from http://cran.r-project.org/bin/macosx/tools/ BTW: please don't point people to obsolete SO posts - the proper cure to most Mavericks problems is to simply install more recent build of R. Cheers, Simon
On Feb 10, 2014, at 6:09 AM, Cole, Tim <tim.cole at ucl.ac.uk> wrote:
I'm forwarding this to R-sig-Mac. Tim Cole -- Tim.Cole at ucl.ac.uk<mailto:Tim.Cole at ich.ucl.ac.uk> Phone +44(0)20 7905 2666 Fax +44(0)20 7905 2381 Centre for Paediatric Epidemiology and Biostatistics UCL Institute of Child Health, London WC1N 1EH, UK From: Tobias Heed <tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com>> To: Levy, Roger <rlevy at ucsd.edu<mailto:rlevy at ucsd.edu>> Cc: "=?utf-8?Q?r-sig-mixed-models=40r-project.org?=" <r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org>> Subject: Re: [R-sig-ME] installing lme4.0 on OS X 10.9 Message-ID: <etPan.52f88faa.3730bb65.2e5a at Macintosh.local<mailto:etPan.52f88faa.3730bb65.2e5a at Macintosh.local>> Content-Type: text/plain Roger, sorry to hear this didn?t work. Unfortunately, I do not recall everything I tried back then. I do recall that the problem was that gcc doesn?t come with Mavericks. A few things still, 1, after reinstalling your Mac, did you update XCode? This is probably necessary. 2, after making the Makevars file, did you restart R? Assuming that most probably you did both, I found these links in my notes, maybe they can point you in the right direction. http://stackoverflow.com/questions/19503995/error-when-with-xcode-5-0-and-rcpp-command-line-tools-are-installed http://stackoverflow.com/questions/19533220/cannot-install-r-package-from-source-in-mac-osx-maverick hope this helps. Best, Tobias -- -------------------------------------------------------------------------------------------------------------- Tobias Heed, PhD Biological Psychology and Neuropsychology Department of Psychology & Human Movement Science | University of Hamburg Von-Melle-Park 11, Room 208 | D-20146 Hamburg, Germany Phone: (49) 40 - 42838 5831 | Fax: (49) 40 - 42838 6591 tobias.heed at uni-hamburg.de<mailto:tobias.heed at uni-hamburg.de> | Website | Google Scholar -------------------------------------------------------------------------------------------------------------- From: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Reply: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Date: February 9,2014 at 23:41:48 To: Tobias Heed tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com> Cc: r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> Subject: Re: [R-sig-ME] installing lme4.0 on OS X 10.9 Thanks so much, Tobias. Unfortunately, setting up a Makevars file like you suggested simply leaves me with the same errors in R as I get in the command line: install.packages("lme4.0", repos="http://r-forge.r-project.org",type="source") ? <snip> ? clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o lme4.so init.o lmer.o local_stubs.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ? ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64' ld: warning: directory not found for option '-L/usr/local/lib/x86_64' ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3' ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) Any further thoughts or suggestions on this, anyone? Best Roger On Feb 7, 2014, at 12:06 PM, Tobias Heed <tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com>> wrote: Dear Roger, if I remember correctly, this solved the problem for me: on the top level of your user account, create a folder .R (if it?s not there yet); in there, create a new text file named Makevars; into this file, paste the following: CC=clang CXX=clang++ -arch x86_64 -ftemplate-depth-256 -stdlib=libstdc++ CXXFLAGS= -O3 -pedantic hope it helps Best, Tobias From: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Reply: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Date: February 7,2014 at 20:59:11 To: r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> Subject: [R-sig-ME] installing lme4.0 on OS X 10.9 Hi all, My Mac laptop died and I am now reinstalling all my packages from scratch. Previously I was using lme4_0.999999-2 and I figure that with a fresh install, I might as well install lme4.0 instead. But I am having trouble compiling it:
install.packages("lme4.0", repos="http://r-forge.r-project.org",type="source")
trying URL 'http://r-forge.r-project.org/src/contrib/lme4.0_0.999999-4.tar.gz' Content type 'application/x-gzip' length 772384 bytes (754 Kb) opened URL ================================================== downloaded 754 Kb * installing *source* package ?lme4.0? ... ** libs llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Matrix/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -fPIC -mtune=core2 -g -O2 -c init.c -o init.o /bin/sh: llvm-gcc-4.2: command not found This happens even after I install Xcode and also llvm-gcc42 on MacPorts; Does anyone have any suggestions? FWIW:
sessionInfo()
R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_3.0.2 I?ve also tried installing from the command line; this bottoms out in a different error: $ R CMD build lme4.0 ? <snip> ? ld: warning: directory not found for option ?-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64? ld: warning: directory not found for option ?-L/usr/local/lib/x86_64? ld: warning: directory not found for option ?-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3? ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [lme4.so] Error 1 More generally, I?m having trouble figuring out what I should install in order to be able to compile lme4.0 from source. Best & many thanks in advance for any guidance, Roger Levy
_______________________________________________ R-sig-mixed-models at r-project.org<mailto:R-sig-mixed-models at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Thank you! Installing gfortran-4.2.3.pkg fixed things. FWIW, it was indeed the most recent build of R that I had installed. So that I (and perhaps other list members) understand the issues more completely: one thing that was very confounding to me is that installing gcc49 via MacPorts *does* provide a Fortran compiler, which goes in /opt/local/bin/gfortran. However, I couldn?t figure out how to get R to use this compiler. Perhaps this requires properly setting variables in ~/.R/Makevars, but I couldn?t figure out what the proper settings would be. Do you have any guidance on this? Best & thanks once more. Roger
On Feb 10, 2014, at 11:08 AM, Simon Urbanek <simon.urbanek at r-project.org> wrote:
Roger does not seem to have a working Fortran compiler which is required for lme4. He may want to install one, e.g. from http://cran.r-project.org/bin/macosx/tools/ BTW: please don't point people to obsolete SO posts - the proper cure to most Mavericks problems is to simply install more recent build of R. Cheers, Simon On Feb 10, 2014, at 6:09 AM, Cole, Tim <tim.cole at ucl.ac.uk> wrote:
I'm forwarding this to R-sig-Mac. Tim Cole -- Tim.Cole at ucl.ac.uk<mailto:Tim.Cole at ich.ucl.ac.uk> Phone +44(0)20 7905 2666 Fax +44(0)20 7905 2381 Centre for Paediatric Epidemiology and Biostatistics UCL Institute of Child Health, London WC1N 1EH, UK From: Tobias Heed <tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com>> To: Levy, Roger <rlevy at ucsd.edu<mailto:rlevy at ucsd.edu>> Cc: "=?utf-8?Q?r-sig-mixed-models=40r-project.org?=" <r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org>> Subject: Re: [R-sig-ME] installing lme4.0 on OS X 10.9 Message-ID: <etPan.52f88faa.3730bb65.2e5a at Macintosh.local<mailto:etPan.52f88faa.3730bb65.2e5a at Macintosh.local>> Content-Type: text/plain Roger, sorry to hear this didn?t work. Unfortunately, I do not recall everything I tried back then. I do recall that the problem was that gcc doesn?t come with Mavericks. A few things still, 1, after reinstalling your Mac, did you update XCode? This is probably necessary. 2, after making the Makevars file, did you restart R? Assuming that most probably you did both, I found these links in my notes, maybe they can point you in the right direction. http://stackoverflow.com/questions/19503995/error-when-with-xcode-5-0-and-rcpp-command-line-tools-are-installed http://stackoverflow.com/questions/19533220/cannot-install-r-package-from-source-in-mac-osx-maverick hope this helps. Best, Tobias -- -------------------------------------------------------------------------------------------------------------- Tobias Heed, PhD Biological Psychology and Neuropsychology Department of Psychology & Human Movement Science | University of Hamburg Von-Melle-Park 11, Room 208 | D-20146 Hamburg, Germany Phone: (49) 40 - 42838 5831 | Fax: (49) 40 - 42838 6591 tobias.heed at uni-hamburg.de<mailto:tobias.heed at uni-hamburg.de> | Website | Google Scholar -------------------------------------------------------------------------------------------------------------- From: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Reply: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Date: February 9,2014 at 23:41:48 To: Tobias Heed tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com> Cc: r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> Subject: Re: [R-sig-ME] installing lme4.0 on OS X 10.9 Thanks so much, Tobias. Unfortunately, setting up a Makevars file like you suggested simply leaves me with the same errors in R as I get in the command line: install.packages("lme4.0", repos="http://r-forge.r-project.org",type="source") ? <snip> ? clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o lme4.so init.o lmer.o local_stubs.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ? ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64' ld: warning: directory not found for option '-L/usr/local/lib/x86_64' ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3' ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) Any further thoughts or suggestions on this, anyone? Best Roger On Feb 7, 2014, at 12:06 PM, Tobias Heed <tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com>> wrote: Dear Roger, if I remember correctly, this solved the problem for me: on the top level of your user account, create a folder .R (if it?s not there yet); in there, create a new text file named Makevars; into this file, paste the following: CC=clang CXX=clang++ -arch x86_64 -ftemplate-depth-256 -stdlib=libstdc++ CXXFLAGS= -O3 -pedantic hope it helps Best, Tobias From: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Reply: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Date: February 7,2014 at 20:59:11 To: r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> Subject: [R-sig-ME] installing lme4.0 on OS X 10.9 Hi all, My Mac laptop died and I am now reinstalling all my packages from scratch. Previously I was using lme4_0.999999-2 and I figure that with a fresh install, I might as well install lme4.0 instead. But I am having trouble compiling it:
install.packages("lme4.0", repos="http://r-forge.r-project.org",type="source")
trying URL 'http://r-forge.r-project.org/src/contrib/lme4.0_0.999999-4.tar.gz' Content type 'application/x-gzip' length 772384 bytes (754 Kb) opened URL ================================================== downloaded 754 Kb * installing *source* package ?lme4.0? ... ** libs llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Matrix/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -fPIC -mtune=core2 -g -O2 -c init.c -o init.o /bin/sh: llvm-gcc-4.2: command not found This happens even after I install Xcode and also llvm-gcc42 on MacPorts; Does anyone have any suggestions? FWIW:
sessionInfo()
R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_3.0.2 I?ve also tried installing from the command line; this bottoms out in a different error: $ R CMD build lme4.0 ? <snip> ? ld: warning: directory not found for option ?-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64? ld: warning: directory not found for option ?-L/usr/local/lib/x86_64? ld: warning: directory not found for option ?-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3? ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [lme4.so] Error 1 More generally, I?m having trouble figuring out what I should install in order to be able to compile lme4.0 from source. Best & many thanks in advance for any guidance, Roger Levy
_______________________________________________ R-sig-mixed-models at r-project.org<mailto:R-sig-mixed-models at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
_______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
On Feb 10, 2014, at 1:26 PM, Levy, Roger <rlevy at ucsd.edu> wrote:
Thank you! Installing gfortran-4.2.3.pkg fixed things. FWIW, it was indeed the most recent build of R that I had installed. So that I (and perhaps other list members) understand the issues more completely: one thing that was very confounding to me is that installing gcc49 via MacPorts *does* provide a Fortran compiler, which goes in /opt/local/bin/gfortran. However, I couldn?t figure out how to get R to use this compiler. Perhaps this requires properly setting variables in ~/.R/Makevars, but I couldn?t figure out what the proper settings would be. Do you have any guidance on this?
The CRAN build is a native build of R and only supports native compilers. If you use MacPorts you're entirely on your own - you may want to use MacPorts R in that case or compile everything from sources accordingly. Cheers, Simon
Best & thanks once more. Roger On Feb 10, 2014, at 11:08 AM, Simon Urbanek <simon.urbanek at r-project.org> wrote:
Roger does not seem to have a working Fortran compiler which is required for lme4. He may want to install one, e.g. from http://cran.r-project.org/bin/macosx/tools/ BTW: please don't point people to obsolete SO posts - the proper cure to most Mavericks problems is to simply install more recent build of R. Cheers, Simon On Feb 10, 2014, at 6:09 AM, Cole, Tim <tim.cole at ucl.ac.uk> wrote:
I'm forwarding this to R-sig-Mac. Tim Cole -- Tim.Cole at ucl.ac.uk<mailto:Tim.Cole at ich.ucl.ac.uk> Phone +44(0)20 7905 2666 Fax +44(0)20 7905 2381 Centre for Paediatric Epidemiology and Biostatistics UCL Institute of Child Health, London WC1N 1EH, UK From: Tobias Heed <tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com>> To: Levy, Roger <rlevy at ucsd.edu<mailto:rlevy at ucsd.edu>> Cc: "=?utf-8?Q?r-sig-mixed-models=40r-project.org?=" <r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org>> Subject: Re: [R-sig-ME] installing lme4.0 on OS X 10.9 Message-ID: <etPan.52f88faa.3730bb65.2e5a at Macintosh.local<mailto:etPan.52f88faa.3730bb65.2e5a at Macintosh.local>> Content-Type: text/plain Roger, sorry to hear this didn?t work. Unfortunately, I do not recall everything I tried back then. I do recall that the problem was that gcc doesn?t come with Mavericks. A few things still, 1, after reinstalling your Mac, did you update XCode? This is probably necessary. 2, after making the Makevars file, did you restart R? Assuming that most probably you did both, I found these links in my notes, maybe they can point you in the right direction. http://stackoverflow.com/questions/19503995/error-when-with-xcode-5-0-and-rcpp-command-line-tools-are-installed http://stackoverflow.com/questions/19533220/cannot-install-r-package-from-source-in-mac-osx-maverick hope this helps. Best, Tobias -- -------------------------------------------------------------------------------------------------------------- Tobias Heed, PhD Biological Psychology and Neuropsychology Department of Psychology & Human Movement Science | University of Hamburg Von-Melle-Park 11, Room 208 | D-20146 Hamburg, Germany Phone: (49) 40 - 42838 5831 | Fax: (49) 40 - 42838 6591 tobias.heed at uni-hamburg.de<mailto:tobias.heed at uni-hamburg.de> | Website | Google Scholar -------------------------------------------------------------------------------------------------------------- From: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Reply: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Date: February 9,2014 at 23:41:48 To: Tobias Heed tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com> Cc: r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> Subject: Re: [R-sig-ME] installing lme4.0 on OS X 10.9 Thanks so much, Tobias. Unfortunately, setting up a Makevars file like you suggested simply leaves me with the same errors in R as I get in the command line: install.packages("lme4.0", repos="http://r-forge.r-project.org",type="source") ? <snip> ? clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o lme4.so init.o lmer.o local_stubs.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ? ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64' ld: warning: directory not found for option '-L/usr/local/lib/x86_64' ld: warning: directory not found for option '-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3' ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) Any further thoughts or suggestions on this, anyone? Best Roger On Feb 7, 2014, at 12:06 PM, Tobias Heed <tobias.heed.uhh at gmail.com<mailto:tobias.heed.uhh at gmail.com>> wrote: Dear Roger, if I remember correctly, this solved the problem for me: on the top level of your user account, create a folder .R (if it?s not there yet); in there, create a new text file named Makevars; into this file, paste the following: CC=clang CXX=clang++ -arch x86_64 -ftemplate-depth-256 -stdlib=libstdc++ CXXFLAGS= -O3 -pedantic hope it helps Best, Tobias From: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Reply: Levy, Roger rlevy at ucsd.edu<mailto:rlevy at ucsd.edu> Date: February 7,2014 at 20:59:11 To: r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> r-sig-mixed-models at r-project.org<mailto:r-sig-mixed-models at r-project.org> Subject: [R-sig-ME] installing lme4.0 on OS X 10.9 Hi all, My Mac laptop died and I am now reinstalling all my packages from scratch. Previously I was using lme4_0.999999-2 and I figure that with a fresh install, I might as well install lme4.0 instead. But I am having trouble compiling it:
install.packages("lme4.0", repos="http://r-forge.r-project.org",type="source")
trying URL 'http://r-forge.r-project.org/src/contrib/lme4.0_0.999999-4.tar.gz' Content type 'application/x-gzip' length 772384 bytes (754 Kb) opened URL ================================================== downloaded 754 Kb * installing *source* package ?lme4.0? ... ** libs llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Matrix/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/include" -fPIC -mtune=core2 -g -O2 -c init.c -o init.o /bin/sh: llvm-gcc-4.2: command not found This happens even after I install Xcode and also llvm-gcc42 on MacPorts; Does anyone have any suggestions? FWIW:
sessionInfo()
R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_3.0.2 I?ve also tried installing from the command line; this bottoms out in a different error: $ R CMD build lme4.0 ? <snip> ? ld: warning: directory not found for option ?-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64? ld: warning: directory not found for option ?-L/usr/local/lib/x86_64? ld: warning: directory not found for option ?-L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3? ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [lme4.so] Error 1 More generally, I?m having trouble figuring out what I should install in order to be able to compile lme4.0 from source. Best & many thanks in advance for any guidance, Roger Levy
_______________________________________________ R-sig-mixed-models at r-project.org<mailto:R-sig-mixed-models at r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
_______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models