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Building R on Mac OSX 10.6.8
2 messages · Dave Pugmire, Simon Urbanek
On Oct 26, 2011, at 11:01 PM, Dave Pugmire wrote:
Hi, I'm trying to build 2.13.2 on OSX 10.6.8 as follows: ./configure CXX=g++ CC=gcc CFLAGS=-fno-common -fexceptions -O2 CXXFLAGS=-fno-common -fexceptions -O2 --without-readline --enable-R-shlib --without-recommended-packages --prefix=/sw/R
Don't change the default flags unless you know what you're doing. In particular -fno-common won't work. Cheers, Simon
make and I get the following error: gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -install_name libR.dylib -compatibility_version 2.13.0 -current_version 2.13.2 -headerpad_max_install_names -o libR.dylib CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o gramLatex.o gramRd.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/Rembedded.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/tre/libtre.a ../extra/xz/liblzma.a ../extra/intl/libintl.a -L../../lib -lRblas -lgfortran -Wl,-framework -Wl,CoreFoundation -licucore -lm -liconv ld: duplicate symbol _Rf_yychar in gramLatex.o and gram.o using gcc version 4.2.1 gcc -v Using built-in specs. Target: i686-apple-darwin10 Configured with: /var/tmp/gcc/gcc-5666.3~6/src/configure --disable-checking --enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin10 --program-prefix=i686-apple-darwin10- --host=x86_64-apple-darwin10 --target=i686-apple-darwin10 --with-gxx-include-dir=/include/c++/4.2.1 Thread model: posix gcc version 4.2.1 (Apple Inc. build 5666) (dot 3) Anyone seen this? Solution? Thanks, Dave [[alternative HTML version deleted]]
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