David.
> On Apr 3, 2014, at 2:25 AM, Agustin Angel Diez Castillo <agustin.diez at uv.es
> > wrote:
>
>> Hi,
>> If i got it right, the original question can be addressed somewhat
>> with inashape3d (alphashape3d package), something like:
>> library(alphashape3d)
>> set1 <- matrix(rnorm(333)/2,ncol=3)
>> plot3d(set1)
>> ashape3d.obj <- ashape3d(set1, alpha = 2)
>> set2 <- matrix(rnorm(33)/2,ncol=3)
>> in3d <- inashape3d(ashape3d.obj, points = set2)
>> plot(ashape3d.obj, transparency = 0.2)
>> rgl.points(points[in3d,], col ="blue")
>>
>> On Thursday, April 3, 2014 07:38 CEST, Don McKenzie <dmck at u.washington.edu
>> > wrote:
>>
>>> Thank you for the pointer. That?s quite a list, and I expect I
>>> will have to concede defeat, lacking the skill set to adapt my use
>>> of the package.
>>>
>>> On Apr 2, 2014, at 9:11 PM, Prof Brian Ripley
>>> <ripley at stats.ox.ac.uk> wrote:
>>>
>>>> Package ptinpoly has generated hangs/segfaults in its checks for
>>>> years, across platforms. That is why there are all the
>>>> exclusions at http://cran.r-project.org/web/checks/check_results_ptinpoly.html
>>>> .
>>>>
>>>> On 03/04/2014 01:48, Don McKenzie wrote:
>>>>> I have a 3D ordination with two groups, and want to identify the
>>>>> points in one group that lie within the 3D convex hull of the
>>>>> other. I would appreciate any enlightenment about why the
>>>>> command at the end (below in a toy example) crashes R when I try
>>>>> to ID the points in the hull using pip3d(), from package
>>>>> ptinpoly. convhulln() is from package geometry. Have I not
>>>>> supplied the right ?Faces? argument to pip3d()?
>>>>>
>>>>> The objects are not large and are reproduced at the bottom of
>>>>> this message.
>>>>>
>>>>> Thanks
>>>>>
>>>>> ------------------------
>>>>>> sessionInfo()
>>>>> R version 3.0.3 (2014-03-06)
>>>>> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>>>>>
>>>>> locale:
>>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>>>>
>>>>> attached base packages:
>>>>> [1] stats graphics grDevices utils datasets methods
>>>>> base
>>>>>
>>>>> other attached packages:
>>>>> [1] ptinpoly_2.0 misc3d_0.8-4 geometry_0.3-4 magic_1.5-6
>>>>> abind_1.4-0
>>>>>
>>>>> loaded via a namespace (and not attached):
>>>>> [1] tools_3.0.3
>>>>>
>>>>> ??
>>>>>
>>>>>> set1 <- matrix(rnorm(99),ncol=3)
>>>>>> ch1 <- convhulln(set1)
>>>>>
>>>>> Output completed. Verifying that all points are below outer
>>>>> planes of
>>>>> all facets. Will make 594 distance computations.
>>>>>
>>>>>> set2 <- matrix(rnorm(33)/2,ncol=3)
>>>>>
>>>>>> temp.out <- pip3d(set1,ch1,set2)
>>>>>
>>>>> R CRASHES HERE
>>>>>
>>>>> ----------------------------------
>>>>>
>>>>>
>>>>> Don McKenzie
>>>>> Research Ecologist
>>>>> Pacific Wildland Fire Sciences Lab
>>>>> US Forest Service
>>>>>
>>>>> Affiliate Professor
>>>>> School of Environmental and Forest Sciences
>>>>> University of Washington
>>>>> dmck at uw.edu
>>>>>
>>>>>
>>>>>
>>>>> ????????????????
>>>>>
>>>>> set1
>>>>> [,1] [,2] [,3]
>>>>> [1,] -0.36381788 0.96624676 -1.09251167
>>>>> [2,] -1.09242946 -0.82002293 0.42005666
>>>>> [3,] 0.93852498 1.18059117 -0.34816811
>>>>> [4,] -0.77413132 1.06018374 -0.37589340
>>>>> [5,] -1.67759103 -1.52469985 0.85310979
>>>>> [6,] 0.81729494 -0.18900503 0.83172169
>>>>> [7,] 0.30546957 0.97549183 -1.30815121
>>>>> [8,] 0.22201517 -0.38260850 -0.05412764
>>>>> [9,] 0.48817331 1.30314678 0.19143994
>>>>> [10,] 1.89836307 -0.34575059 0.55599170
>>>>> [11,] 0.20776401 0.04977816 -0.78034565
>>>>> [12,] -0.76819740 0.24554574 0.40398017
>>>>> [13,] 0.38369531 1.07688341 -0.22686023
>>>>> [14,] 0.31806928 1.15482656 -0.99259846
>>>>> [15,] 1.07142182 -1.03495199 -0.15650968
>>>>> [16,] -1.24667302 -0.35217160 0.71090188
>>>>> [17,] -0.92079326 -1.44075490 -0.42838857
>>>>> [18,] 0.16907840 0.37587569 1.34994069
>>>>> [19,] 0.50947015 1.81852997 -1.83315646
>>>>> [20,] 0.52015187 1.56904146 0.90679914
>>>>> [21,] -0.04261864 -1.22145642 0.51953397
>>>>> [22,] -0.86611946 -1.21106313 -0.86571463
>>>>> [23,] -0.13147715 0.07893287 0.83513033
>>>>> [24,] -0.63488792 -0.89396994 0.70103420
>>>>> [25,] -0.11370015 2.00351619 -0.17652412
>>>>> [26,] -1.04527261 -0.14570830 1.64893662
>>>>> [27,] 0.46238598 -0.07990767 0.16431874
>>>>> [28,] -0.72396505 1.45081393 -0.91068823
>>>>> [29,] -0.48892499 -1.05289633 1.36531224
>>>>> [30,] 1.83781721 1.50964339 1.85100986
>>>>> [31,] 1.00023790 -0.92779325 -2.16783507
>>>>> [32,] -0.51429532 -1.44766548 -1.41456589
>>>>> [33,] -0.93249545 -0.21845332 0.75023990
>>>>>
>>>>>> ch1
>>>>> [,1] [,2] [,3]
>>>>> [1,] 15 31 10
>>>>> [2,] 29 30 10
>>>>> [3,] 29 15 10
>>>>> [4,] 26 28 25
>>>>> [5,] 26 29 5
>>>>> [6,] 26 29 30
>>>>> [7,] 32 15 31
>>>>> [8,] 19 28 25
>>>>> [9,] 19 32 31
>>>>> [10,] 19 32 28
>>>>> [11,] 19 30 25
>>>>> [12,] 19 31 10
>>>>> [13,] 19 30 10
>>>>> [14,] 21 29 5
>>>>> [15,] 21 29 15
>>>>> [16,] 21 32 5
>>>>> [17,] 21 32 15
>>>>> [18,] 20 30 25
>>>>> [19,] 20 26 25
>>>>> [20,] 20 26 30
>>>>> [21,] 16 28 5
>>>>> [22,] 16 26 5
>>>>> [23,] 16 26 28
>>>>> [24,] 22 28 5
>>>>> [25,] 22 32 5
>>>>> [26,] 22 32 28
>>>>>
>>>>>> set2
>>>>> [,1] [,2] [,3]
>>>>> [1,] 0.061298933 0.561676607 -0.29029312
>>>>> [2,] -0.227292687 0.980185118 0.21751216
>>>>> [3,] 0.182482967 0.913803801 -0.08308208
>>>>> [4,] -0.143596376 -0.007469921 -0.33050543
>>>>> [5,] -0.354096826 0.023132113 0.45463150
>>>>> [6,] 0.006247011 0.183155253 0.97496500
>>>>> [7,] 0.128600720 -0.249603537 -0.24710206
>>>>> [8,] -0.418782299 -0.325201099 0.28908138
>>>>> [9,] 0.231829464 0.343250895 0.65134735
>>>>> [10,] -0.392597726 0.126741875 0.21411363
>>>>> [11,] -0.051290704 -1.007826669 0.92808143
>>>>>
>>>>> _______________________________________________
>>>>> R-SIG-Mac mailing list
>>>>> R-SIG-Mac at r-project.org
>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>
>>>>
>>>>
>>>> --
>>>> Brian D. Ripley, ripley at stats.ox.ac.uk
>>>> Professor of Applied Statistics, http://www.stats.ox.ac.uk/
>>>> ~ripley/
>>>> University of Oxford, Tel: +44 1865 272861 (self)
>>>> 1 South Parks Road, +44 1865 272866 (PA)
>>>> Oxford OX1 3TG, UK Fax: +44 1865 272595
>>>
>>> Don McKenzie
>>> Research Ecologist
>>> Pacific Wildland Fire Sciences Lab
>>> US Forest Service
>>>
>>> Affiliate Professor
>>> School of Environmental and Forest Sciences
>>> University of Washington
>>> dmck at uw.edu
>>>
>>>
>>>
>>>
>>>
>>> [[alternative HTML version deleted]]
>>>
>>
>> _______________________________________________
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>
> Don McKenzie
> Research Ecologist
> Pacific Wildland Fire Sciences Lab
> US Forest Service
>
> Affiliate Professor
> School of Environmental and Forest Sciences
> University of Washington
>
> dmck at uw.edu
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac at r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
David Winsemius, MD
Alameda, CA, USA