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64-bit build of R crashes while idle

7 messages · Brian Ripley, Simon Urbanek, Steve Lianoglou +1 more

Original
Steve Lianoglou
# 
Hi,

Early last week, I installed the 64-bit leopard build for R provided  
here: http://r.research.att.com/

I've realized that when R.app is running in the background (and  
sitting idle), it eventually beach-balls. When I switch over to see  
what's happening, I see that R is crashed, and it's giving me options  
to:

* abort
* save workspace then abort
* 1 or 2 others

Sorry, I didn't copy the issue down exactly because I hastily quit it  
and reinstalled R 2.7.2 to get back to work. I'm not sure if it's R  
itself, or the R.app GUI ... I can mess around w/ it a bit later next  
week once I get passed some deadlines.

I wonder if it's the R.app gui that's the problem, and not R itself.  
I'm running R 2.8 via the terminal now to see if it eventually hangs/ 
core-dumps/whatever.

Are other people working with 64-bit R/R.apphaving these issues? Is  
the best path to using 64-bit R via custom compilation? Maybe ignore  
R.app for now? What are you folks doing?

Thanks,
-steve

Crash log:

Process:         R [3009]
Path:            /Applications/R.app/Contents/MacOS/R
Identifier:      org.R-project.R
Version:         R 2.8.0 GUI 1.26 (5256)
Code Type:       X86-64 (Native)
Parent Process:  launchd [171]

Date/Time:       2008-11-05 17:18:21.279 -0500
OS Version:      Mac OS X 10.5.5 (9F33)
Report Version:  6

Exception Type:  EXC_CRASH (SIGSEGV)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Crashed Thread:  1

Thread 0:
0   libSystem.B.dylib             	0x00007fffffe01259 __longcopy + 89
1   libSystem.B.dylib             	0x00007fffffe00882 __memcpy + 226
2   com.apple.security            	0x00007fff83612bea  
Security::NameValuePair::CloneData(Security::CssmData const&) + 60
3   com.apple.security            	0x00007fff83612d2a  
Security::NameValuePair::NameValuePair(Security::CssmData const&) + 108
4   com.apple.security            	0x00007fff83612e94  
Security::NameValueDictionary::NameValueDictionary(Security::CssmData  
const&) + 136
5   com.apple.security            	0x00007fff8352436d  
Security::KeychainCore::CCallbackMgr::consume(unsigned int, unsigned  
int, Security::CssmData const&) + 41
6   com.apple.security            	0x00007fff8360985a  
Security 
::SecurityServer 
::NotificationPort::receive(Security::MachPlusPlus::Message const&) +  
360
7   com.apple.security            	0x00007fff83627767  
Security::MachPlusPlus::CFAutoPort::cfCallback(__CFMachPort*, void*,  
long, void*) + 49
8   com.apple.CoreFoundation      	0x00007fff83301a87  
__CFMachPortPerform + 119
9   com.apple.CoreFoundation      	0x00007fff833233cc  
CFRunLoopRunSpecific + 3516
10  com.apple.HIToolbox           	0x00007fff816eeea2  
RunCurrentEventLoopInMode + 278
11  com.apple.HIToolbox           	0x00007fff816eecd8  
ReceiveNextEventCommon + 322
12  com.apple.HIToolbox           	0x00007fff816eeb83  
BlockUntilNextEventMatchingListInMode + 79
13  com.apple.AppKit              	0x00007fff83d94c44 _DPSNextEvent +  
603
14  com.apple.AppKit              	0x00007fff83d94583 -[NSApplication  
nextEventMatchingMask:untilDate:inMode:dequeue:] + 136
15  org.R-project.R               	0x00000001000077d6 -[RController  
doProcessEvents:] + 182
16  org.R-project.R               	0x00000001000049f0 -[RController  
handleReadConsole:] + 144
17  org.R-project.R               	0x000000010000dd61 Re_ReadConsole +  
449
18  org.R-project.R               	0x0000000100019260  
run_REngineRmainloop + 896
19  org.R-project.R               	0x00000001000109e7 -[REngine  
runREPL] + 119
20  org.R-project.R               	0x0000000100001f99 main + 729
21  org.R-project.R               	0x0000000100001c94 start + 52

Thread 1 Crashed:
0   libSystem.B.dylib             	0x00007fff810c75f6 mach_msg_trap + 10
1   libSystem.B.dylib             	0x00007fff810cec2f mach_msg + 59
2   com.apple.CoreFoundation      	0x00007fff83322c6f  
CFRunLoopRunSpecific + 1631
3   com.apple.CFNetwork           	0x00007fff828f7fa3  
CFURLCacheWorkerThread(void*) + 321
4   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
5   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 2:
0   libSystem.B.dylib             	0x00007fff811135c6 select 
$DARWIN_EXTSN + 10
1   com.apple.Foundation          	0x00007fff8011ee25  
__NSThread__main__ + 1157
2   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
3   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 3:
0   libSystem.B.dylib             	0x00007fff810c7656  
semaphore_timedwait_signal_trap + 10
1   libSystem.B.dylib             	0x00007fff810f66ce  
_pthread_cond_wait + 1207
2   com.apple.Foundation          	0x00007fff801621e4 -[NSCondition  
waitUntilDate:] + 228
3   com.apple.Foundation          	0x00007fff80162012 - 
[NSConditionLock lockWhenCondition:beforeDate:] + 130
4   com.apple.AppKit              	0x00007fff83dfcb7d -[NSUIHeartBeat  
_heartBeatThread:] + 417
5   com.apple.Foundation          	0x00007fff8011ee25  
__NSThread__main__ + 1157
6   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
7   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 4:
0   libSystem.B.dylib             	0x00007fff810ce5be __semwait_signal  
+ 10
1   com.apple.QuartzCore          	0x00007fff80548a5d  
fe_fragment_thread + 54
2   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
3   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 5:
0   libSystem.B.dylib             	0x00007fff810ce5be __semwait_signal  
+ 10
1   com.apple.QuartzCore          	0x00007fff80548a5d  
fe_fragment_thread + 54
2   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
3   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 6:
0   libSystem.B.dylib             	0x00007fff810ce5be __semwait_signal  
+ 10
1   com.apple.QuartzCore          	0x00007fff80548a5d  
fe_fragment_thread + 54
2   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
3   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 7:
0   libSystem.B.dylib             	0x00007fff810ce5be __semwait_signal  
+ 10
1   com.apple.QuartzCore          	0x00007fff80548a5d  
fe_fragment_thread + 54
2   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
3   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 8:
0   libSystem.B.dylib             	0x00007fff810ce5be __semwait_signal  
+ 10
1   com.apple.QuartzCore          	0x00007fff80548a5d  
fe_fragment_thread + 54
2   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
3   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 9:
0   libSystem.B.dylib             	0x00007fff810ce5be __semwait_signal  
+ 10
1   com.apple.QuartzCore          	0x00007fff80548a5d  
fe_fragment_thread + 54
2   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
3   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 10:
0   libSystem.B.dylib             	0x00007fff810ce5be __semwait_signal  
+ 10
1   com.apple.QuartzCore          	0x00007fff80548a5d  
fe_fragment_thread + 54
2   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
3   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 11:
0   libSystem.B.dylib             	0x00007fff810c75f6 mach_msg_trap + 10
1   libSystem.B.dylib             	0x00007fff810cec2f mach_msg + 59
2   com.apple.CoreFoundation      	0x00007fff83322c6f  
CFRunLoopRunSpecific + 1631
3   com.apple.Foundation          	0x00007fff8017e440 + 
[NSURLConnection(NSURLConnectionReallyInternal) _resourceLoadLoop:] +  
288
4   com.apple.Foundation          	0x00007fff8011ee25  
__NSThread__main__ + 1157
5   libSystem.B.dylib             	0x00007fff810f5913 _pthread_start +  
316
6   libSystem.B.dylib             	0x00007fff810f57d5 thread_start + 13

Thread 1 crashed with X86 Thread State (64-bit):
   rax: 0x0000000010004005  rbx: 0x0000000000000000  rcx:  
0x0000000113945918  rdx: 0x0000000000000000
   rdi: 0x0000000113945a10  rsi: 0x0000000003000006  rbp:  
0x0000000113945970  rsp: 0x0000000113945918
    r8: 0x0000000000003603   r9: 0x0000000000000000  r10:  
0x0000000000000450  r11: 0x0000000000000202
   r12: 0x0000000000003603  r13: 0x0000000000000450  r14:  
0x0000000113945a10  r15: 0x0000000003000006
   rip: 0x00007fff810c75f6  rfl: 0x0000000000000202  cr2:  
0x000000007bb0b000

Binary Images:
        0x100000000 -        0x10004dfff +org.R-project.R R 2.8.0 GUI  
1.26 (5256) <2f1f30d758a95cbd5367a0c49c48b085> /Applications/R.app/ 
Contents/MacOS/R
        0x1000a1000 -        0x1002e7ff3 +libR.dylib ??? (???)  
<ab71f9d191d7e9e66ddccfd826fb102b> /Library/Frameworks/R.framework/ 
Versions/2.8/Resources/lib/libR.dylib
        0x1003bd000 -        0x100491ffd  com.apple.WebKit 5525.18  
(5525.18) <cbf4d854bed8f484c83eede380b8ceef> /System/Library/ 
Frameworks/WebKit.framework/Versions/A/WebKit
        0x10055b000 -        0x10055dfff  com.apple.ExceptionHandling  
1.5 (10) /System/Library/Frameworks/ExceptionHandling.framework/ 
Versions/A/ExceptionHandling
        0x100563000 -        0x100563fef +libRblas.dylib ??? (???) / 
Library/Frameworks/R.framework/Versions/2.8/Resources/lib/libRblas.dylib
        0x100566000 -        0x100590fd9 +libreadline.5.2.dylib ???  
(???) /Library/Frameworks/R.framework/Versions/2.8/Resources/lib/ 
libreadline.5.2.dylib
        0x1005a4000 -        0x10069cfef  libiconv.2.dylib ??? (???)  
<2b42104e7aa2da6e64f979e585af02e9> /usr/lib/libiconv.2.dylib
        0x1006a3000 -        0x1006d9fe7  libncurses.5.4.dylib ???  
(???) <fce74e098f0f7c67cb0d73c9a8612cf9> /usr/lib/libncurses.5.4.dylib
        0x1006f8000 -        0x1007e1ff7  com.apple.JavaScriptCore  
5525.18 (5525.18) /System/Library/Frameworks/JavaScriptCore.framework/ 
Versions/A/JavaScriptCore
        0x100857000 -        0x101036fff  com.apple.WebCore 5525.18.1  
(5525.18.1) /System/Library/Frameworks/WebKit.framework/Versions/A/ 
Frameworks/WebCore.framework/Versions/A/WebCore
        0x113948000 -        0x113b0ffef  com.apple.RawCamera.bundle  
2.0.9 (2.0.9) <a498e2930ec4065974087a1de577d177> /System/Library/ 
CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
        0x117824000 -        0x117829ff7 +methods.so ??? (???)  
<4aa83ac0fa85ee1f9d145f264e6b59f6> /Library/Frameworks/R.framework/ 
Resources/library/methods/libs/x86_64/methods.so
        0x117951000 -        0x1179abff7 +stats.so ??? (???)  
<e3e828f728c5146e025413e47768b09f> /Library/Frameworks/R.framework/ 
Resources/library/stats/libs/x86_64/stats.so
        0x117a11000 -        0x117a38fea +grDevices.so ??? (???)  
<94e5db03c61216544cb4af953572e4b2> /Library/Frameworks/R.framework/ 
Resources/library/grDevices/libs/x86_64/grDevices.so
        0x117c88000 -        0x117c8dfff  libCGXCoreImage.A.dylib ???  
(???) <3f3e687a269f5850f12859fb122353d1> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
CoreGraphics.framework/Versions/A/Resources/libCGXCoreImage.A.dylib
        0x117fb8000 -        0x117fbefff   
com.apple.DictionaryServiceComponent 1.1 (1.1)  
<e22715edd6443ad1d5bd951917408c0e> /System/Library/Components/ 
DictionaryService.component/Contents/MacOS/DictionaryService
     0x7fff5fc00000 -     0x7fff5fc2e593  dyld 96.2 (???)  
<d9ab5c6362a1c7430d8f13b90977a7f4> /usr/lib/dyld
     0x7fff80003000 -     0x7fff800e4fff  libcrypto.0.9.7.dylib ???  
(???) <66f1f8773bd9fdfdcfd09e2b4b010636> /usr/lib/libcrypto.0.9.7.dylib
     0x7fff800e5000 -     0x7fff800f6ffd  libz.1.dylib ??? (???)  
<2022cc8950afdf485ba1df76364ba725> /usr/lib/libz.1.dylib
     0x7fff800f7000 -     0x7fff80114fef  com.apple.CoreVideo 1.5.1  
(1.5.1) <78253b3fe8d3dcc90f159d7ed866c295> /System/Library/Frameworks/ 
CoreVideo.framework/Versions/A/CoreVideo
     0x7fff80115000 -     0x7fff803affe3  com.apple.Foundation 6.5.6  
(677.21) <8995b3185ca91d3508c7580794d40813> /System/Library/Frameworks/ 
Foundation.framework/Versions/C/Foundation
     0x7fff803b0000 -     0x7fff8042aff3  com.apple.CoreText 2.0.3  
(???) <827bbfef670df72316719c25bfb39915> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/ 
Versions/A/CoreText
     0x7fff8042b000 -     0x7fff80433ffa  libbsm.dylib ??? (???)  
<a870a8e515e1a6407c81ddeebba21793> /usr/lib/libbsm.dylib
     0x7fff80434000 -     0x7fff8045bfff  libxslt.1.dylib ??? (???)  
<22a74e7859cfbf63ae7fc310b0a669a4> /usr/lib/libxslt.1.dylib
     0x7fff8045c000 -     0x7fff8083bfef  com.apple.QuartzCore 1.5.5  
(1.5.5) <944a4c140d2b278772f6847855198758> /System/Library/Frameworks/ 
QuartzCore.framework/Versions/A/QuartzCore
     0x7fff8083c000 -     0x7fff8083eff9  libRadiance.dylib ??? (???)  
<6d9f2235e8f70a7aedfc59383a7548d8> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libRadiance.dylib
     0x7fff8083f000 -     0x7fff80e06fff  com.apple.CoreGraphics  
1.351.33 (???) <cbeb13a829f2293258057bd74482dcb4> /System/Library/ 
Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ 
CoreGraphics.framework/Versions/A/CoreGraphics
     0x7fff80e07000 -     0x7fff80e1ffff  com.apple.DictionaryServices  
1.0.0 (1.0.0) <ce7135044e951deaa2b687bc8537809a> /System/Library/ 
Frameworks/CoreServices.framework/Versions/A/Frameworks/ 
DictionaryServices.framework/Versions/A/DictionaryServices
     0x7fff80e20000 -     0x7fff80e22ff7  libffi.dylib ??? (???)  
<5ccd57a3de7db7f7bffa1b6ef2217b0c> /usr/lib/libffi.dylib
     0x7fff80e23000 -     0x7fff80eeefef  com.apple.ColorSync 4.5.1  
(4.5.1) /System/Library/Frameworks/ApplicationServices.framework/ 
Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
     0x7fff80eef000 -     0x7fff80f2bff7  libGLImage.dylib ??? (???)  
<3748c2cef1c83f5c253974ceaca70f51> /System/Library/Frameworks/ 
OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
     0x7fff80f2c000 -     0x7fff80fbdfff  com.apple.SearchKit 1.2.1  
(1.2.1) <e2a25e04f281fe8ff7088a08a549020f> /System/Library/Frameworks/ 
CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/ 
Versions/A/SearchKit
     0x7fff80fbe000 -     0x7fff80fccfff  libCSync.A.dylib ??? (???)  
<bf8210d72d3b7c60a27ee05eaf91132c> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
     0x7fff80fcd000 -     0x7fff80fcffff  com.apple.NavigationServices  
3.5.2 (163) <3e58cfe6d1bdcc4a4a64b6f79421291f> /System/Library/ 
Frameworks/Carbon.framework/Versions/A/Frameworks/ 
NavigationServices.framework/Versions/A/NavigationServices
     0x7fff80fd0000 -     0x7fff81056fef  com.apple.audio.CoreAudio  
3.1.0 (3.1) <60b30bc6d228b3dea7c5307c25812a45> /System/Library/ 
Frameworks/CoreAudio.framework/Versions/A/CoreAudio
     0x7fff81057000 -     0x7fff81087fff  com.apple.shortcut 1 (1.0)  
<01a5e9a7c5f269cbba2cbd61ccdf1b2f> /System/Library/PrivateFrameworks/ 
Shortcut.framework/Versions/A/Shortcut
     0x7fff81088000 -     0x7fff81089ff3   
com.apple.audio.units.AudioUnit 1.5 (1.5) /System/Library/Frameworks/ 
AudioUnit.framework/Versions/A/AudioUnit
     0x7fff8108a000 -     0x7fff810c5fff  com.apple.AE 402.2 (402.2)  
<b03583e0747f82199e0d9604014faa34> /System/Library/Frameworks/ 
CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
     0x7fff810c6000 -     0x7fff8124affb  libSystem.B.dylib ??? (???)  
<61a1506a5f8d9ffa37298999e05f519c> /usr/lib/libSystem.B.dylib
     0x7fff8124b000 -     0x7fff8126cfff  libresolv.9.dylib ??? (???)  
<104bc36bc6cf4dd8988693cd52a7f26d> /usr/lib/libresolv.9.dylib
     0x7fff8126d000 -     0x7fff8130dfe3   
com.apple.ApplicationServices.ATS 3.4 (???)  
<605c92164cfe8414f172f649b85e9200> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/ 
Versions/A/ATS
     0x7fff8130e000 -     0x7fff81312fff  libmathCommon.A.dylib ???  
(???) /usr/lib/system/libmathCommon.A.dylib
     0x7fff81313000 -     0x7fff816cbfff  libLAPACK.dylib ??? (???) / 
System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/ 
vecLib.framework/Versions/A/libLAPACK.dylib
     0x7fff816cc000 -     0x7fff819b3feb  com.apple.HIToolbox 1.5.4  
(???) <b04f0dda2224955c8b21eabe7088e0df> /System/Library/Frameworks/ 
Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/ 
HIToolbox
     0x7fff819b4000 -     0x7fff819b4ffb   
com.apple.installserver.framework 1.0 (8) /System/Library/ 
PrivateFrameworks/InstallServer.framework/Versions/A/InstallServer
     0x7fff819b5000 -     0x7fff819b5ffd  com.apple.vecLib 3.4.2  
(vecLib 3.4.2) /System/Library/Frameworks/vecLib.framework/Versions/A/ 
vecLib
     0x7fff819b6000 -     0x7fff81a2cfef  libvMisc.dylib ??? (???) / 
System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/ 
vecLib.framework/Versions/A/libvMisc.dylib
     0x7fff81a2d000 -     0x7fff81a6afe7  com.apple.coreui 1.2 (62) / 
System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
     0x7fff81a6b000 -     0x7fff81af3fe7  libsqlite3.0.dylib ??? (???)  
<3c7ab3523b816dbd3e039ee7e6e2c580> /usr/lib/libsqlite3.0.dylib
     0x7fff81af4000 -     0x7fff81c0dffb   
com.apple.audio.toolbox.AudioToolbox 1.5.1 (1.5.1) /System/Library/ 
Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
     0x7fff81c0e000 -     0x7fff81c17fff  libCGATS.A.dylib ??? (???)  
<90d088b60b0295c216dd2e0d2df1f86c> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
CoreGraphics.framework/Versions/A/Resources/libCGATS.A.dylib
     0x7fff81c18000 -     0x7fff81c32fff  libvDSP.dylib ??? (???) / 
System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/ 
vecLib.framework/Versions/A/libvDSP.dylib
     0x7fff81c33000 -     0x7fff823f0fef  libBLAS.dylib ??? (???) / 
System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/ 
vecLib.framework/Versions/A/libBLAS.dylib
     0x7fff823f1000 -     0x7fff82486ffb  com.apple.LaunchServices 290  
(290) <b5b494e44b291a782bee370a046d5727> /System/Library/Frameworks/ 
CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/ 
Versions/A/LaunchServices
     0x7fff82487000 -     0x7fff82537fef   
com.apple.CoreServices.OSServices 226.5 (226.5)  
<4461ef69cec249de2315c88e83d4c904> /System/Library/Frameworks/ 
CoreServices.framework/Versions/A/Frameworks/OSServices.framework/ 
Versions/A/OSServices
     0x7fff82538000 -     0x7fff825d3fe7  com.apple.ink.framework  
101.3 (86) <03096cd083a6e70bc7a18ad1b81feb15> /System/Library/ 
Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/ 
Versions/A/Ink
     0x7fff825d4000 -     0x7fff825e0ff1  libgcc_s.1.dylib ??? (???)  
<42e4fd8079ba44258ea9afc27d2f48f3> /usr/lib/libgcc_s.1.dylib
     0x7fff825e1000 -     0x7fff8269ffff  edu.mit.Kerberos 6.0.12  
(6.0.12) <7f29f5ac76d758cb3487d0429220fca3> /System/Library/Frameworks/ 
Kerberos.framework/Versions/A/Kerberos
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System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/ 
libGL.dylib
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com.apple.SystemConfiguration 1.9.2 (1.9.2)  
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DesktopServicesPriv
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(5.0.0) /System/Library/Frameworks/Carbon.framework/Versions/A/ 
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ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
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com.apple.print.framework.Print 218.0.2 (220.1)  
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libGLU.dylib
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ApplicationServices.framework/Versions/A/Frameworks/ 
CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
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vImage.framework/Versions/A/vImage
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3.4.2 (vecLib 3.4.2) /System/Library/Frameworks/Accelerate.framework/ 
Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
     0x7fff83829000 -     0x7fff83d49fc6   
libGLProgrammability.dylib ??? (???)  
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OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
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(949.34) <c750765812bf8e2dfdce523e1e13d5cb> /System/Library/Frameworks/ 
AppKit.framework/Versions/C/AppKit
     0x7fff8467e000 -     0x7fff846f2fe7  libstdc++.6.dylib ??? (???)  
<379a6a2dc6e21ba77310b3d2d9ea30ac> /usr/lib/libstdc++.6.dylib
     0x7fff846f3000 -     0x7fff84736fef  com.apple.QD 3.11.54 (???)  
<cac2d6ee11c5db967bdf180747256122> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/QD.framework/ 
Versions/A/QD
     0x7fff84737000 -     0x7fff84755fff  libPng.dylib ??? (???)  
<4017eab74319a648dfd73b7d503e557d> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/ 
Versions/A/Resources/libPng.dylib
     0x7fff84756000 -     0x7fff84780fff  libcups.2.dylib ??? (???)  
<b548bfb490ecbb8543a6992d592aa876> /usr/lib/libcups.2.dylib
     0x7fff84781000 -     0x7fff847d5fe3  com.apple.HIServices 1.7.0  
(???) <ab682a94bbb2418c772570a5f5e13849> /System/Library/Frameworks/ 
ApplicationServices.framework/Versions/A/Frameworks/ 
HIServices.framework/Versions/A/HIServices
     0x7fff847d6000 -     0x7fff847d9fff  com.apple.securityhi 3.0  
(30817) <d7c8cb3ade97482c5dbe4f68b32396cd> /System/Library/Frameworks/ 
Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/ 
SecurityHI
     0x7fffffe00000 -     0x7fffffe01780  libSystem.B.dylib ??? (???) / 
usr/lib/libSystem.B.dylib
0xfffffffffffec000 - 0xfffffffffffeffff  libobjc.A.dylib ??? (???) / 
usr/lib/libobjc.A.dylib
Brian Ripley
#
On Thu, 6 Nov 2008, Steve Lianoglou wrote:

            

      
      
      
    

        
That is the behaviour of R's segfault handler, but from the log it looks 
like code in R.app caused it running in a callback from R itself.

            

      
      
      
    

        
I only use 64-bit command-line R and my own compilation of R.  The latter 
seems pretty much rock-solid.

            

      
      
      
    

        

      
      
    

        

  
    

      
      
    

  


  


      

    

    

      
      

        


  

        

      Simon Urbanek
    

    

      
      #
    

  


  

      
Steve,

thanks for the report. At a first glance from the crash log it seems  
possibly like a problem in the OS and not R itself. Note that 64-bit  
Cocoa applications are still rare on Leopard, so I'm not sure how  
stable GUI applications are in 64-bit. As Brian pointed out R itself  
is solid in 64-bit, so if you have issues, you can always run 64-bit R  
on the command line (Terminal).

Nonetheless any feedback on 64-bit R.app is highly appreciated since  
not many users appear to use it. Clearly, the more feedback we get the  
better we can make it.

        
On Nov 6, 2008, at 11:25 , Steve Lianoglou wrote:

        

            

      
      
      
    

        
Custom compilation is not really necessary. If there are any issues  
with our build then it is likely to be present in all builds.

Cheers,
Simon

  
  


  


      

    

    

      
      

        


  

        

      Simon Urbanek
    

    

      
      #
    

  


  

      
On Nov 6, 2008, at 11:25 , Steve Lianoglou wrote:

        

            

      
      
      
    

        
Note that the Leopard build contains both 32-bit *and* 64-bit, so you  
don't have to install anything special to get back to 32-bit - just  
start the 32-bit version of the GUI and you're set.

Cheers,
S

            

      
      
      
    

        

      
      
    

  
  


  


      

    

    

      
      

        


  

        

      Steve Lianoglou
    

    

      
      #
    

  


  

      
On Nov 6, 2008, at 12:50 PM, Simon Urbanek wrote:

            

      
      
      
    

        
I knew I could switch between 32-bit and 64-bit versions of R from the  
command line, but I wasn't sure how to do it using the R.app GUI. How  
do I do it?

I feel like I remember reading somewhere that you can find a 64-bit  
checkbox in the "File > Get Info" dialog box to toggle 64bit apps. Is  
that it?

Thanks,
-steve

--
Steve Lianoglou
Graduate Student: Physiology, Biophysics and Systems Biology
Weill Medical College of Cornell University

http://cbio.mskcc.org/~lianos

  
  


  


      

    

    

      
      

        


  

        

      Simon Urbanek
    

    

      
      #
    

  


  

      
On Nov 6, 2008, at 13:04 , Steve Lianoglou wrote:

        

            

      
      
      
    

        
Each is a separate binary - if you start the 32-bit R.app you get 32- 
bit R. If you start 64-bit R.app, you get 64-bit R --- it's as simple.  
I recommend renaming the 64-bit one to R64.app to make it easier to  
remember which is which :).

Cheers,
Simon

            

      
      
      
    

  
  


  


      

    

    

      
      

        


  

        

      Rob Goedman
    

    

      
      #
    

  


  

      
Hi Simon,

Not sure if I use it as much/often as Steve, but 64bit R.app is up in  
an open space virtually all the time on my system using a recent daily  
'your' R and the GUI I build with XCode. Usually for several (2 to 3)  
days, used at least several times a day. If I restart R.app, like this  
morning, it'll select the latest daily build. Right now R 2.8.0 GUI  
1.26 unknown (5259).

All packages have been installed from sources. In the past that gave  
me some issues (as I privately mentioned to you). But since then I  
have tried not to mix binaries and sources.

Difficulties are in the well known 'suspects', Gtk2, Graphviz, rgl,  
ggobi, but otherwise I've seen very few problems.

On your system, does R-2.9 build in Xcode?

Rob

        
On Nov 6, 2008, at 9:48 AM, Simon Urbanek wrote: