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Bioconductor - reposTools errors

4 messages · Susan Gurney, Anestis Antoniadis, stefano iacus

Original
Susan Gurney
# 
Dear Sir,

         I am trying to download Bioconductor on a Mac5- having
installed R -and using the 'Package Installer' I keep getting error
messages.
 Any help with  command codes to download Bioconductor packages (especially affy)
for Mac computer would be very much appreciated-
                                           Susan Gurney,
                                          Comp. Bio student, Columbia U
stefano iacus
# 
Hi Susan,
the complete (default set of packages of) bioc 1.5 is now available in 
binary form.
Can you please report us the errors you get and exactly what you do, 
your mac os x versio etc ?
stefano
On Nov 11, 2004, at 2:18 AM, Susan Gurney wrote:

            

      
      
      
    

        

      
      
    

  
  


  


      

    

    

      
      

        


  

        

      Anestis Antoniadis
    

    

      
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Dear Stefano,
dear all
I have tried to get the complete bioc 1.5 in binary form from the R 
menu.
While it downloads and installs everything in my ~/Library/R/library
whenever invoked by, for example library(rama), I get an error that the 
package
is pre 2.0.0.
How do you force R downloading the right packages without recompiling 
them?
Many thanks
Anestis

        
On Nov 11, 2004, at 9:01 AM, stefano iacus wrote:

        

            

      
      
      
    

        

      
      
    

            

      
      
      
    

        

      
      
    

        
====================================================
Prof. Anestis ANTONIADIS
Laboratoire de Modelisation et Calcul(LMC-IMAG)
Universite Joseph Fourier
Tour IRMA
B.P.53
38041 Grenoble CEDEX 9
FRANCE

Tel:(33) (0) 476514306
Fax:(33) (0) 476631263

  
  


  


      

    

    

      
      

        


  

        

      stefano iacus
    

    

      
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On Nov 11, 2004, at 10:47 AM, Anestis Antoniadis wrote:

        

            

      
      
      
    

        
it seems that some packages have not been updated by my script. I've 
now forced the complete rebuilding of all the packages, I hope it would 
be ok in a couple of days (due to mirroring).
And you are right, rama is one of the packages built for 1.9.1 and 
never updated (gosh!)

I'll file a mail to this mailing list when the complete process is over.

Stefano