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Request for guidance on compiling C++ using RInside within Xcode 5, OSX 10.9.4, R 3.1.1 (mavericks version)
6 messages · Roger Dean, Kevin Ushey, Simon Urbanek +1 more
2 days later
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To be precise this seems like a bug in Rcpp/RInside - whichever is adding the -I../Rcpp include. Since Rcpp contains String.h it will break everything due to the conflict with standard string.h (HFS is case-insensitive by default). Cheers, Simon
On Jul 28, 2014, at 2:13 AM, Kevin Ushey <kevinushey at gmail.com> wrote:
Hi Roger, Did you see this StackOverflow post? http://stackoverflow.com/questions/15489065/rcppeclipse-on-mac-os-x/17054405 It sounds like the poster describes the same problem as what you're seeing, and various prescriptions are offered. Cheers, Kevin On Fri, Jul 25, 2014 at 6:44 AM, Roger Dean <Roger.Dean at uws.edu.au> wrote:
Request for guidance on compiling C++ using RInside within Xcode 5, OSX
10.9.4, R 3.1.1 (mavericks version).
Hi R-SIG-mac experts,
I know this question is close to some asked previously, and also to
comment 2.10 of the FAQ document on RInside provided by Dirk Eddelbuettel
and Romain Francois, but I still cannot solve it, nor find examples of
others doing so that are clear (or at least, clear to me, apologies if
appropriate).
I would like to compile C++ code that uses RInside, but within Xcode 5,
and using OSX 10.9.4, R 3.1.1 (mavericks version). The reason I wish to do
this is that I am writing time series analysis/generative externals for
MAXMSP, a widely used MIDI and audio processing platform, and it is built
on C and focused on Xcode as the developer tool (it is difficult to find
people compiling MAX externals using clang++ and not Xcode, though I
continue to search also towards this possible alternative route.)
So the helpful examples in the RInside source include rinside_sample0.cpp,
and this compiles/builds fine for me with the Make process, or with clang++
directly. And it runs, as do all but one of the other examples. It is very
simple as intended, and I'm sure many of you will have looked at it:
// -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 8; -*-
//
// Simple example showing how to do the standard 'hello, world' using
embedded R
//
// Copyright (C) 2009 Dirk Eddelbuettel
// Copyright (C) 2010 Dirk Eddelbuettel and Romain Francois
//
// GPL'ed
#include <RInside.h> // for the embedded R via RInside
int main(int argc, char *argv[]) {
RInside R(argc, argv); // create an embedded R instance
R["txt"] = "Hello, world!\n"; // assign a char* (string) to 'txt'
R.parseEvalQ("cat(txt)"); // eval the init string, ignoring
any returns
exit(0);
}
I have taken note of the comments about the .R/Makevars, including the
statements about -stdlib=libstdc++ -mmacosx-version-min=10.6 from Sturla
Molden (Feb 8 2014) and others. I am providing to Xcode libR.dylib, and
paths to headers and other libraries. I saw a reference to an Rcpp library,
but in my RCpp source and R 3.1.1 there is only Rcpp.so, not .dylib. I have
added this to the Xcode project, though I am not clear that it will be used.
After innumerable permutations in my attempts, I can only get as far as
reproducible problems with the string.h code from the Rcpp source (see
listing below taken directly from the Xcode 'issues' listing). I realise
there is a historic issue about the LLVM default compiler (now labelled
Apple LLVM 5.0), but I hoped that was what Makevars could solve.
Can anyone advise whether it is currently feasible to do what I want, and
ideally give more specific cues, please?
many thanks in advance
Roger Dean
roger.dean at uws.edu.au<mailto:roger.dean at uws.edu.au>
Reported Issues:
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:52:17:
Use of undeclared identifier 'internal'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:52:39:
Expected member name or ';' after declaration specifiers
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:53:17:
Use of undeclared identifier 'internal'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:53:45:
Expected member name or ';' after declaration specifiers
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:66:16:
Unknown type name 'SEXP'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:71:23:
Unknown type name 'StringProxy'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:75:23:
Unknown type name 'const_StringProxy'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:102:17:
Unknown type name 'Rcomplex'; did you mean '_Complex'?
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:103:17:
Unknown type name 'Rbyte'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:108:35:
Unknown type name 'Rbyte'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:110:35:
Unknown type name 'Rcomplex'; did you mean '_Complex'?
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:111:35:
Unknown type name 'SEXP'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:112:41:
Unknown type name 'StringProxy'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:170:42:
Unknown type name 'StringProxy'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:178:36:
Unknown type name 'SEXP'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:313:16:
Unknown type name 'SEXP'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:318:16:
Unknown type name 'SEXP'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:355:9:
Unknown type name 'SEXP'
/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:358:21:
Implicit instantiation of undefined template 'std::basic_string<char,
std::char_traits<char>, std::allocator<char> >'
Too many errors emitted, stopping now
Roger Dean, Founder and Artistic Director, austraLYSIS. Mobile: +61 (0)481
309 612.
Mail: austraLYSIS, PO Box 225, Milperra, NSW 2214, Australia.
Email<mailto:dr.metagroove at mindless.com> ... Web<
http://www.australysis.com/> ? Recent CD release: MultiPiano (1978-2012),
solo and computer interactive piano, Tall Poppies TP 225 (double CD). John
Shand's review: 'a trail-blazer', 'exquisite', 'surprising and
disquieting', 'willing grooves' ...
Prof Roger Dean,PhD, DSc, DLitt, FAHA, Research Professor of Sonic
Communication, Music, Cognition and Action Group, MARCS Institute.
Mail: MARCS Institute, University of Western Sydney, Locked Bag 1797,
PENRITH, NSW 2751, Australia.
Emai<mailto:roger.dean at uws.edu.au>l ? Phone: +61 2 9772 6902 ... Fax: +61
2 9772 6040
We are in Milperra ('Bankstown Campus'), just by the M5 motorway. Check
the campus maps to visit.
Web<http://marcs.uws.edu.au> ... Articles list<
http://tinyurl.com/RTDeanCitations> ... Wikipedia<
http://en.wikipedia.org/wiki/Roger_Dean_(musician)> ? I am founding
co-editor of the sound intermedia journal soundsRite<
http://soundsite.uws.edu.au> and currently co-editing the forthcoming
Oxford Handbook of Algorithmic Music.
I try to minimise 'Email Distraction', in order to get on with research
and creative work. So I reply to all appropriate emails, but in batches. If
yours needs a response, please expect to get one normally within 2-4
working days.
[[alternative HTML version deleted]]
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
[[alternative HTML version deleted]]
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac at r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
I am somewhat new to this thread as Simon just added me to the CC list ...
On 28 July 2014 at 09:58, Simon Urbanek wrote:
| To be precise this seems like a bug in Rcpp/RInside - whichever is adding the -I../Rcpp include. Since Rcpp contains String.h it will break everything due to the conflict with standard string.h (HFS is case-insensitive by default).
... but I cannot help but notice that we had String.h since approximately forever:
edd at max:~/git/rcpp$ git log inst/include/Rcpp/String.h | tail -5
commit b5bff59902c3cabd73f592b362e7cc76a7d06496
Author: Romain Fran?ois <romain at r-enthusiasts.com>
Date: Mon Dec 3 10:06:18 2012 +0000
Rcpp::String
edd at max:~/git/rcpp$
Folks have built RInside happily since 2012. Could this not be a simple
matter of header inclusion order?
Dirk
|
| Cheers,
| Simon
|
|
| On Jul 28, 2014, at 2:13 AM, Kevin Ushey <kevinushey at gmail.com> wrote:
| | > Hi Roger, | > | > Did you see this StackOverflow post? | > http://stackoverflow.com/questions/15489065/rcppeclipse-on-mac-os-x/17054405 | > | > It sounds like the poster describes the same problem as what you're seeing, | > and various prescriptions are offered. | > | > Cheers, | > Kevin | > | >
| > On Fri, Jul 25, 2014 at 6:44 AM, Roger Dean <Roger.Dean at uws.edu.au> wrote:
| >
| >> Request for guidance on compiling C++ using RInside within Xcode 5, OSX
| >> 10.9.4, R 3.1.1 (mavericks version).
| >>
| >> Hi R-SIG-mac experts,
| >> I know this question is close to some asked previously, and also to
| >> comment 2.10 of the FAQ document on RInside provided by Dirk Eddelbuettel
| >> and Romain Francois, but I still cannot solve it, nor find examples of
| >> others doing so that are clear (or at least, clear to me, apologies if
| >> appropriate).
| >>
| >> I would like to compile C++ code that uses RInside, but within Xcode 5,
| >> and using OSX 10.9.4, R 3.1.1 (mavericks version). The reason I wish to do
| >> this is that I am writing time series analysis/generative externals for
| >> MAXMSP, a widely used MIDI and audio processing platform, and it is built
| >> on C and focused on Xcode as the developer tool (it is difficult to find
| >> people compiling MAX externals using clang++ and not Xcode, though I
| >> continue to search also towards this possible alternative route.)
| >>
| >> So the helpful examples in the RInside source include rinside_sample0.cpp,
| >> and this compiles/builds fine for me with the Make process, or with clang++
| >> directly. And it runs, as do all but one of the other examples. It is very
| >> simple as intended, and I'm sure many of you will have looked at it:
| >>
| >> // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 8; -*-
| >> //
| >> // Simple example showing how to do the standard 'hello, world' using
| >> embedded R
| >> //
| >> // Copyright (C) 2009 Dirk Eddelbuettel
| >> // Copyright (C) 2010 Dirk Eddelbuettel and Romain Francois
| >> //
| >> // GPL'ed
| >>
| >> #include <RInside.h> // for the embedded R via RInside
| >>
| >> int main(int argc, char *argv[]) {
| >>
| >> RInside R(argc, argv); // create an embedded R instance
| >>
| >> R["txt"] = "Hello, world!\n"; // assign a char* (string) to 'txt'
| >>
| >> R.parseEvalQ("cat(txt)"); // eval the init string, ignoring
| >> any returns
| >>
| >> exit(0);
| >> }
| >>
| >> I have taken note of the comments about the .R/Makevars, including the
| >> statements about -stdlib=libstdc++ -mmacosx-version-min=10.6 from Sturla
| >> Molden (Feb 8 2014) and others. I am providing to Xcode libR.dylib, and
| >> paths to headers and other libraries. I saw a reference to an Rcpp library,
| >> but in my RCpp source and R 3.1.1 there is only Rcpp.so, not .dylib. I have
| >> added this to the Xcode project, though I am not clear that it will be used.
| >>
| >> After innumerable permutations in my attempts, I can only get as far as
| >> reproducible problems with the string.h code from the Rcpp source (see
| >> listing below taken directly from the Xcode 'issues' listing). I realise
| >> there is a historic issue about the LLVM default compiler (now labelled
| >> Apple LLVM 5.0), but I hoped that was what Makevars could solve.
| >>
| >> Can anyone advise whether it is currently feasible to do what I want, and
| >> ideally give more specific cues, please?
| >>
| >> many thanks in advance
| >>
| >> Roger Dean
| >>
| >> roger.dean at uws.edu.au<mailto:roger.dean at uws.edu.au>
| >> Reported Issues:
| >>
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:52:17:
| >> Use of undeclared identifier 'internal'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:52:39:
| >> Expected member name or ';' after declaration specifiers
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:53:17:
| >> Use of undeclared identifier 'internal'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:53:45:
| >> Expected member name or ';' after declaration specifiers
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:66:16:
| >> Unknown type name 'SEXP'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:71:23:
| >> Unknown type name 'StringProxy'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:75:23:
| >> Unknown type name 'const_StringProxy'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:102:17:
| >> Unknown type name 'Rcomplex'; did you mean '_Complex'?
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:103:17:
| >> Unknown type name 'Rbyte'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:108:35:
| >> Unknown type name 'Rbyte'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:110:35:
| >> Unknown type name 'Rcomplex'; did you mean '_Complex'?
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:111:35:
| >> Unknown type name 'SEXP'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:112:41:
| >> Unknown type name 'StringProxy'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:170:42:
| >> Unknown type name 'StringProxy'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:178:36:
| >> Unknown type name 'SEXP'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:313:16:
| >> Unknown type name 'SEXP'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:318:16:
| >> Unknown type name 'SEXP'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:355:9:
| >> Unknown type name 'SEXP'
| >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:358:21:
| >> Implicit instantiation of undefined template 'std::basic_string<char,
| >> std::char_traits<char>, std::allocator<char> >'
| >> Too many errors emitted, stopping now
| >>
| >>
| >> Roger Dean, Founder and Artistic Director, austraLYSIS. Mobile: +61 (0)481
| >> 309 612.
| >> Mail: austraLYSIS, PO Box 225, Milperra, NSW 2214, Australia.
| >> Email<mailto:dr.metagroove at mindless.com> ... Web<
| >> http://www.australysis.com/> ? Recent CD release: MultiPiano (1978-2012),
| >> solo and computer interactive piano, Tall Poppies TP 225 (double CD). John
| >> Shand's review: 'a trail-blazer', 'exquisite', 'surprising and
| >> disquieting', 'willing grooves' ...
| >>
| >> Prof Roger Dean,PhD, DSc, DLitt, FAHA, Research Professor of Sonic
| >> Communication, Music, Cognition and Action Group, MARCS Institute.
| >> Mail: MARCS Institute, University of Western Sydney, Locked Bag 1797,
| >> PENRITH, NSW 2751, Australia.
| >> Emai<mailto:roger.dean at uws.edu.au>l ? Phone: +61 2 9772 6902 ... Fax: +61
| >> 2 9772 6040
| >> We are in Milperra ('Bankstown Campus'), just by the M5 motorway. Check
| >> the campus maps to visit.
| >> Web<http://marcs.uws.edu.au> ... Articles list<
| >> http://tinyurl.com/RTDeanCitations> ... Wikipedia<
| >> http://en.wikipedia.org/wiki/Roger_Dean_(musician)> ? I am founding
| >> co-editor of the sound intermedia journal soundsRite<
| >> http://soundsite.uws.edu.au> and currently co-editing the forthcoming
| >> Oxford Handbook of Algorithmic Music.
| >> I try to minimise 'Email Distraction', in order to get on with research
| >> and creative work. So I reply to all appropriate emails, but in batches. If
| >> yours needs a response, please expect to get one normally within 2-4
| >> working days.
| >>
| >>
| >> [[alternative HTML version deleted]]
| >>
| >>
| >> _______________________________________________
| >> R-SIG-Mac mailing list
| >> R-SIG-Mac at r-project.org
| >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
| >>
| >>
| >
| > [[alternative HTML version deleted]]
| >
| > _______________________________________________
| > R-SIG-Mac mailing list
| > R-SIG-Mac at r-project.org
| > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
|
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
On Jul 28, 2014, at 10:14 AM, Dirk Eddelbuettel <edd at debian.org> wrote:
I am somewhat new to this thread as Simon just added me to the CC list ...
On 28 July 2014 at 09:58, Simon Urbanek wrote:
| To be precise this seems like a bug in Rcpp/RInside - whichever is adding the -I../Rcpp include. Since Rcpp contains String.h it will break everything due to the conflict with standard string.h (HFS is case-insensitive by default).
... but I cannot help but notice that we had String.h since approximately forever:
edd at max:~/git/rcpp$ git log inst/include/Rcpp/String.h | tail -5
commit b5bff59902c3cabd73f592b362e7cc76a7d06496
Author: Romain Fran?ois <romain at r-enthusiasts.com>
Date: Mon Dec 3 10:06:18 2012 +0000
Rcpp::String
edd at max:~/git/rcpp$
Folks have built RInside happily since 2012. Could this not be a simple
matter of header inclusion order?
You'll have to ask the author of this thread (it's a bit cryptic - and/or check out the SO post), but as I understand it something is adding -I...Rcpp to CPPFLAGS which is bad and not needed since the proper include is #include <Rcpp/String.h> which is fine. I don't know who/what is adding the internal Rcpp directory to the include path. Cheers, Simon
Dirk | | Cheers, | Simon | | | On Jul 28, 2014, at 2:13 AM, Kevin Ushey <kevinushey at gmail.com> wrote: | | > Hi Roger, | > | > Did you see this StackOverflow post? | > http://stackoverflow.com/questions/15489065/rcppeclipse-on-mac-os-x/17054405 | > | > It sounds like the poster describes the same problem as what you're seeing, | > and various prescriptions are offered. | > | > Cheers, | > Kevin | > | > | > On Fri, Jul 25, 2014 at 6:44 AM, Roger Dean <Roger.Dean at uws.edu.au> wrote: | > | >> Request for guidance on compiling C++ using RInside within Xcode 5, OSX | >> 10.9.4, R 3.1.1 (mavericks version). | >> | >> Hi R-SIG-mac experts, | >> I know this question is close to some asked previously, and also to | >> comment 2.10 of the FAQ document on RInside provided by Dirk Eddelbuettel | >> and Romain Francois, but I still cannot solve it, nor find examples of | >> others doing so that are clear (or at least, clear to me, apologies if | >> appropriate). | >> | >> I would like to compile C++ code that uses RInside, but within Xcode 5, | >> and using OSX 10.9.4, R 3.1.1 (mavericks version). The reason I wish to do | >> this is that I am writing time series analysis/generative externals for | >> MAXMSP, a widely used MIDI and audio processing platform, and it is built | >> on C and focused on Xcode as the developer tool (it is difficult to find | >> people compiling MAX externals using clang++ and not Xcode, though I | >> continue to search also towards this possible alternative route.) | >> | >> So the helpful examples in the RInside source include rinside_sample0.cpp, | >> and this compiles/builds fine for me with the Make process, or with clang++ | >> directly. And it runs, as do all but one of the other examples. It is very | >> simple as intended, and I'm sure many of you will have looked at it: | >> | >> // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 8; -*- | >> // | >> // Simple example showing how to do the standard 'hello, world' using | >> embedded R | >> // | >> // Copyright (C) 2009 Dirk Eddelbuettel | >> // Copyright (C) 2010 Dirk Eddelbuettel and Romain Francois | >> // | >> // GPL'ed | >> | >> #include <RInside.h> // for the embedded R via RInside | >> | >> int main(int argc, char *argv[]) { | >> | >> RInside R(argc, argv); // create an embedded R instance | >> | >> R["txt"] = "Hello, world!\n"; // assign a char* (string) to 'txt' | >> | >> R.parseEvalQ("cat(txt)"); // eval the init string, ignoring | >> any returns | >> | >> exit(0); | >> } | >> | >> I have taken note of the comments about the .R/Makevars, including the | >> statements about -stdlib=libstdc++ -mmacosx-version-min=10.6 from Sturla | >> Molden (Feb 8 2014) and others. I am providing to Xcode libR.dylib, and | >> paths to headers and other libraries. I saw a reference to an Rcpp library, | >> but in my RCpp source and R 3.1.1 there is only Rcpp.so, not .dylib. I have | >> added this to the Xcode project, though I am not clear that it will be used. | >> | >> After innumerable permutations in my attempts, I can only get as far as | >> reproducible problems with the string.h code from the Rcpp source (see | >> listing below taken directly from the Xcode 'issues' listing). I realise | >> there is a historic issue about the LLVM default compiler (now labelled | >> Apple LLVM 5.0), but I hoped that was what Makevars could solve. | >> | >> Can anyone advise whether it is currently feasible to do what I want, and | >> ideally give more specific cues, please? | >> | >> many thanks in advance | >> | >> Roger Dean | >> | >> roger.dean at uws.edu.au<mailto:roger.dean at uws.edu.au> | >> Reported Issues: | >> | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:52:17: | >> Use of undeclared identifier 'internal' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:52:39: | >> Expected member name or ';' after declaration specifiers | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:53:17: | >> Use of undeclared identifier 'internal' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:53:45: | >> Expected member name or ';' after declaration specifiers | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:66:16: | >> Unknown type name 'SEXP' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:71:23: | >> Unknown type name 'StringProxy' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:75:23: | >> Unknown type name 'const_StringProxy' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:102:17: | >> Unknown type name 'Rcomplex'; did you mean '_Complex'? | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:103:17: | >> Unknown type name 'Rbyte' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:108:35: | >> Unknown type name 'Rbyte' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:110:35: | >> Unknown type name 'Rcomplex'; did you mean '_Complex'? | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:111:35: | >> Unknown type name 'SEXP' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:112:41: | >> Unknown type name 'StringProxy' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:170:42: | >> Unknown type name 'StringProxy' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:178:36: | >> Unknown type name 'SEXP' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:313:16: | >> Unknown type name 'SEXP' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:318:16: | >> Unknown type name 'SEXP' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:355:9: | >> Unknown type name 'SEXP' | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:358:21: | >> Implicit instantiation of undefined template 'std::basic_string<char, | >> std::char_traits<char>, std::allocator<char> >' | >> Too many errors emitted, stopping now | >> | >> | >> Roger Dean, Founder and Artistic Director, austraLYSIS. Mobile: +61 (0)481 | >> 309 612. | >> Mail: austraLYSIS, PO Box 225, Milperra, NSW 2214, Australia. | >> Email<mailto:dr.metagroove at mindless.com> ... Web< | >> http://www.australysis.com/> ? Recent CD release: MultiPiano (1978-2012), | >> solo and computer interactive piano, Tall Poppies TP 225 (double CD). John | >> Shand's review: 'a trail-blazer', 'exquisite', 'surprising and | >> disquieting', 'willing grooves' ... | >> | >> Prof Roger Dean,PhD, DSc, DLitt, FAHA, Research Professor of Sonic | >> Communication, Music, Cognition and Action Group, MARCS Institute. | >> Mail: MARCS Institute, University of Western Sydney, Locked Bag 1797, | >> PENRITH, NSW 2751, Australia. | >> Emai<mailto:roger.dean at uws.edu.au>l ? Phone: +61 2 9772 6902 ... Fax: +61 | >> 2 9772 6040 | >> We are in Milperra ('Bankstown Campus'), just by the M5 motorway. Check | >> the campus maps to visit. | >> Web<http://marcs.uws.edu.au> ... Articles list< | >> http://tinyurl.com/RTDeanCitations> ... Wikipedia< | >> http://en.wikipedia.org/wiki/Roger_Dean_(musician)> ? I am founding | >> co-editor of the sound intermedia journal soundsRite< | >> http://soundsite.uws.edu.au> and currently co-editing the forthcoming | >> Oxford Handbook of Algorithmic Music. | >> I try to minimise 'Email Distraction', in order to get on with research | >> and creative work. So I reply to all appropriate emails, but in batches. If | >> yours needs a response, please expect to get one normally within 2-4 | >> working days. | >> | >> | >> [[alternative HTML version deleted]] | >> | >> | >> _______________________________________________ | >> R-SIG-Mac mailing list | >> R-SIG-Mac at r-project.org | >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac | >> | >> | > | > [[alternative HTML version deleted]] | > | > _______________________________________________ | > R-SIG-Mac mailing list | > R-SIG-Mac at r-project.org | > https://stat.ethz.ch/mailman/listinfo/r-sig-mac | -- http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
It is a user error as pointed out by this answer
http://stackoverflow.com/a/17054405/143305
The OP adds the Rcpp/include/Rcpp directory on top of already having
Rcpp/include (which eg our Makefiles do).
It simply is a case of a wrong and overzealous local configuration coupled
with the case-insensitivity of the HFS file system.
No Rcpp or RInside issue here.
Dirk
On 28 July 2014 at 10:21, Simon Urbanek wrote:
| On Jul 28, 2014, at 10:14 AM, Dirk Eddelbuettel <edd at debian.org> wrote:
| | > | > I am somewhat new to this thread as Simon just added me to the CC list ... | >
| > On 28 July 2014 at 09:58, Simon Urbanek wrote:
| > | To be precise this seems like a bug in Rcpp/RInside - whichever is adding the -I../Rcpp include. Since Rcpp contains String.h it will break everything due to the conflict with standard string.h (HFS is case-insensitive by default). | > | > ... but I cannot help but notice that we had String.h since approximately forever: | > | > edd at max:~/git/rcpp$ git log inst/include/Rcpp/String.h | tail -5 | > commit b5bff59902c3cabd73f592b362e7cc76a7d06496 | > Author: Romain Fran?ois <romain at r-enthusiasts.com> | > Date: Mon Dec 3 10:06:18 2012 +0000 | > | > Rcpp::String | > edd at max:~/git/rcpp$ | > | > Folks have built RInside happily since 2012. Could this not be a simple | > matter of header inclusion order? | > | | You'll have to ask the author of this thread (it's a bit cryptic - and/or check out the SO post), but as I understand it something is adding -I...Rcpp to CPPFLAGS which is bad and not needed since the proper include is #include <Rcpp/String.h> which is fine. I don't know who/what is adding the internal Rcpp directory to the include path. | | Cheers, | Simon | | | | > Dirk | > | > | > | | > | Cheers, | > | Simon | > | | > |
| > | On Jul 28, 2014, at 2:13 AM, Kevin Ushey <kevinushey at gmail.com> wrote:
| > | | > | > Hi Roger, | > | > | > | > Did you see this StackOverflow post? | > | > http://stackoverflow.com/questions/15489065/rcppeclipse-on-mac-os-x/17054405 | > | > | > | > It sounds like the poster describes the same problem as what you're seeing, | > | > and various prescriptions are offered. | > | > | > | > Cheers, | > | > Kevin | > | > | > | >
| > | > On Fri, Jul 25, 2014 at 6:44 AM, Roger Dean <Roger.Dean at uws.edu.au> wrote:
| > | >
| > | >> Request for guidance on compiling C++ using RInside within Xcode 5, OSX
| > | >> 10.9.4, R 3.1.1 (mavericks version).
| > | >>
| > | >> Hi R-SIG-mac experts,
| > | >> I know this question is close to some asked previously, and also to
| > | >> comment 2.10 of the FAQ document on RInside provided by Dirk Eddelbuettel
| > | >> and Romain Francois, but I still cannot solve it, nor find examples of
| > | >> others doing so that are clear (or at least, clear to me, apologies if
| > | >> appropriate).
| > | >>
| > | >> I would like to compile C++ code that uses RInside, but within Xcode 5,
| > | >> and using OSX 10.9.4, R 3.1.1 (mavericks version). The reason I wish to do
| > | >> this is that I am writing time series analysis/generative externals for
| > | >> MAXMSP, a widely used MIDI and audio processing platform, and it is built
| > | >> on C and focused on Xcode as the developer tool (it is difficult to find
| > | >> people compiling MAX externals using clang++ and not Xcode, though I
| > | >> continue to search also towards this possible alternative route.)
| > | >>
| > | >> So the helpful examples in the RInside source include rinside_sample0.cpp,
| > | >> and this compiles/builds fine for me with the Make process, or with clang++
| > | >> directly. And it runs, as do all but one of the other examples. It is very
| > | >> simple as intended, and I'm sure many of you will have looked at it:
| > | >>
| > | >> // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 8; -*-
| > | >> //
| > | >> // Simple example showing how to do the standard 'hello, world' using
| > | >> embedded R
| > | >> //
| > | >> // Copyright (C) 2009 Dirk Eddelbuettel
| > | >> // Copyright (C) 2010 Dirk Eddelbuettel and Romain Francois
| > | >> //
| > | >> // GPL'ed
| > | >>
| > | >> #include <RInside.h> // for the embedded R via RInside
| > | >>
| > | >> int main(int argc, char *argv[]) {
| > | >>
| > | >> RInside R(argc, argv); // create an embedded R instance
| > | >>
| > | >> R["txt"] = "Hello, world!\n"; // assign a char* (string) to 'txt'
| > | >>
| > | >> R.parseEvalQ("cat(txt)"); // eval the init string, ignoring
| > | >> any returns
| > | >>
| > | >> exit(0);
| > | >> }
| > | >>
| > | >> I have taken note of the comments about the .R/Makevars, including the
| > | >> statements about -stdlib=libstdc++ -mmacosx-version-min=10.6 from Sturla
| > | >> Molden (Feb 8 2014) and others. I am providing to Xcode libR.dylib, and
| > | >> paths to headers and other libraries. I saw a reference to an Rcpp library,
| > | >> but in my RCpp source and R 3.1.1 there is only Rcpp.so, not .dylib. I have
| > | >> added this to the Xcode project, though I am not clear that it will be used.
| > | >>
| > | >> After innumerable permutations in my attempts, I can only get as far as
| > | >> reproducible problems with the string.h code from the Rcpp source (see
| > | >> listing below taken directly from the Xcode 'issues' listing). I realise
| > | >> there is a historic issue about the LLVM default compiler (now labelled
| > | >> Apple LLVM 5.0), but I hoped that was what Makevars could solve.
| > | >>
| > | >> Can anyone advise whether it is currently feasible to do what I want, and
| > | >> ideally give more specific cues, please?
| > | >>
| > | >> many thanks in advance
| > | >>
| > | >> Roger Dean
| > | >>
| > | >> roger.dean at uws.edu.au<mailto:roger.dean at uws.edu.au>
| > | >> Reported Issues:
| > | >>
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:52:17:
| > | >> Use of undeclared identifier 'internal'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:52:39:
| > | >> Expected member name or ';' after declaration specifiers
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:53:17:
| > | >> Use of undeclared identifier 'internal'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:53:45:
| > | >> Expected member name or ';' after declaration specifiers
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:66:16:
| > | >> Unknown type name 'SEXP'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:71:23:
| > | >> Unknown type name 'StringProxy'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:75:23:
| > | >> Unknown type name 'const_StringProxy'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:102:17:
| > | >> Unknown type name 'Rcomplex'; did you mean '_Complex'?
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:103:17:
| > | >> Unknown type name 'Rbyte'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:108:35:
| > | >> Unknown type name 'Rbyte'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:110:35:
| > | >> Unknown type name 'Rcomplex'; did you mean '_Complex'?
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:111:35:
| > | >> Unknown type name 'SEXP'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:112:41:
| > | >> Unknown type name 'StringProxy'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:170:42:
| > | >> Unknown type name 'StringProxy'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:178:36:
| > | >> Unknown type name 'SEXP'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:313:16:
| > | >> Unknown type name 'SEXP'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:318:16:
| > | >> Unknown type name 'SEXP'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:355:9:
| > | >> Unknown type name 'SEXP'
| > | >> /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include/Rcpp/String.h:358:21:
| > | >> Implicit instantiation of undefined template 'std::basic_string<char,
| > | >> std::char_traits<char>, std::allocator<char> >'
| > | >> Too many errors emitted, stopping now
| > | >>
| > | >>
| > | >> Roger Dean, Founder and Artistic Director, austraLYSIS. Mobile: +61 (0)481
| > | >> 309 612.
| > | >> Mail: austraLYSIS, PO Box 225, Milperra, NSW 2214, Australia.
| > | >> Email<mailto:dr.metagroove at mindless.com> ... Web<
| > | >> http://www.australysis.com/> ? Recent CD release: MultiPiano (1978-2012),
| > | >> solo and computer interactive piano, Tall Poppies TP 225 (double CD). John
| > | >> Shand's review: 'a trail-blazer', 'exquisite', 'surprising and
| > | >> disquieting', 'willing grooves' ...
| > | >>
| > | >> Prof Roger Dean,PhD, DSc, DLitt, FAHA, Research Professor of Sonic
| > | >> Communication, Music, Cognition and Action Group, MARCS Institute.
| > | >> Mail: MARCS Institute, University of Western Sydney, Locked Bag 1797,
| > | >> PENRITH, NSW 2751, Australia.
| > | >> Emai<mailto:roger.dean at uws.edu.au>l ? Phone: +61 2 9772 6902 ... Fax: +61
| > | >> 2 9772 6040
| > | >> We are in Milperra ('Bankstown Campus'), just by the M5 motorway. Check
| > | >> the campus maps to visit.
| > | >> Web<http://marcs.uws.edu.au> ... Articles list<
| > | >> http://tinyurl.com/RTDeanCitations> ... Wikipedia<
| > | >> http://en.wikipedia.org/wiki/Roger_Dean_(musician)> ? I am founding
| > | >> co-editor of the sound intermedia journal soundsRite<
| > | >> http://soundsite.uws.edu.au> and currently co-editing the forthcoming
| > | >> Oxford Handbook of Algorithmic Music.
| > | >> I try to minimise 'Email Distraction', in order to get on with research
| > | >> and creative work. So I reply to all appropriate emails, but in batches. If
| > | >> yours needs a response, please expect to get one normally within 2-4
| > | >> working days.
| > | >>
| > | >>
| > | >> [[alternative HTML version deleted]]
| > | >>
| > | >>
| > | >> _______________________________________________
| > | >> R-SIG-Mac mailing list
| > | >> R-SIG-Mac at r-project.org
| > | >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
| > | >>
| > | >>
| > | >
| > | > [[alternative HTML version deleted]]
| > | >
| > | > _______________________________________________
| > | > R-SIG-Mac mailing list
| > | > R-SIG-Mac at r-project.org
| > | > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
| > |
| >
| > --
| > http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
| >
|
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org