Some users of Rgraphviz may be interested in the new Bioconductor package "gaggle". It presents possibly fewer installation problems, and provides access to interactive graph display and manipulation from R via the Cytoscape program. Installation instructions may be found at http://gaggle.systemsbiology.org/docs/geese/r/ Click on the 'Mac OSX' link to the left on this page. The vignette describes how to broadcast a network from R to Cytoscape: http://www.bioconductor.org/packages/1.9/bioc/vignettes/gaggle/inst/doc/gaggle.pdf Feedback welcome. - Paul Shannon Institute for Systems Biology Seattle
Rgraphviz alternative (was Re: Rgraphviz installation problem)
1 message · Paul Shannon