Two other questions

Hi Dan,
I'm forwardinf this mail to r-sig-mac as well as it is of common 
interest I guess.

Hi Stefano,

Thanks for the quick reply. The solution works for all help requests
from Rcmdr except for getting help on a dataframe contained in a
package, where an error occurs. However, it is an Rcmdr issue since the
same error occurs under Linux and Windows when htmlhelp is TRUE.

I do have two other questions, one trivial (but I haven't seen
documented anywhere) and one difficult. The trivial question is how do 
I
create a binary package for OS X. Under Windows this amounts to 
building
the package, and then zipping the directory of the built package and 
its
contents using the command "zip -r9x". My guess is that the process is
similar under OS X, with the exception that tar is used instead of zip.
As a result, other than "c", "z", and "f", what flags do I use with 
tar?
yes, exactly. "tar zcf xx.tgz path_to_xx_package".
By default, .tgz is the extension for binary packages for R under OS X.
The difficult issue is that if you run Rcmdr in a workspace, and then
save that workspace before quiting R, some elements of the Rcmdr
namespace seems to persist. The impact of this is that when you attempt
to launch R again from the directory containing the workspace, R aborts
on launch.
It could be of interest to be able to reproduce it.  Can you give us 
some reproducible small workspace and R.app error log?
 I found that I could get R to load if I had X11 _prior_ to
launching R. I think this is a result of Rcmdr requiring tcltk, and 
this
element of the Rcmdr namespace is one of the things that persists.
yes
R
doesn't abort under Linux or Windows since everything happens under the
same windowing system.
not for W?ndows, but under windows tcltk is always available. But you 
are right, it works.
 I sent email to John Fox about this issue, but
since he does not own a Mac, there isn't much he can do.
I'm not sure how he can solve this problem since (but probably someone 
here has hints).
 My question is
whether or not there is a work around to this whereby R starts X11
rather than aborting, or an option can be set whereby X11 is started at
R startup?
we can add an option for that R.app prefs in fact but I'm not sure it 
could work either as launching X11 is not syncronous anyway. Even if 
R.app starts X11 for you, there's no guarantee that X11 is really 
running at the moment R requires it.
contents using the command "zip -r9x". My guess is that the process is 
similar under OS X, with the exception that tar is used instead of zip. 
As a result, other than "c", "z", and "f", what flags do I use with 
tar?
yes, exactly. "tar zcf xx.tgz path_to_xx_package". By default, .tgz is 
the extension for binary packages for R under OS X.
do remember that the -z flag to tar is for the *gzip* algorithm, not the 
Dos-world "pkzip" kind of format.

if i didn't know this, the text above would be fairly ambiguous.

--elijah

contents using the command "zip -r9x". My guess is that the process 
is similar under OS X, with the exception that tar is used instead 
of zip. As a result, other than "c", "z", and "f", what flags do I 
use with tar?
yes, exactly. "tar zcf xx.tgz path_to_xx_package". By default, .tgz 
is the extension for binary packages for R under OS X.

do remember that the -z flag to tar is for the *gzip* algorithm, not 
the Dos-world "pkzip" kind of format.

if i didn't know this, the text above would be fairly ambiguous.

--elijah
yes, the resulting archive is tar-gzipped.
stefano
Is there some reason not to use R CMD build packagename --binary  --use-zip?
Hadley
no, apart that we want to distinguish platform by extensions and zip is 
likely to be Windows for R.
The other reason is that on mac os x (at the moment) a binary package 
is assumed to have this tar.gz format, I mean for things like 
install.packages() etc on mac os x. R Core is going to make this more 
flexible in R-devel, I mean the R code part to allow for different 
extensions/format with some platform defaults.
stefano

Is there some reason not to use R CMD build packagename --binary  
--use-zip?
Hadley

Is there some reason not to use R CMD build packagename --binary  
--use-zip?
Yes, as Eliah pointed out (I wondered why, now I see why :)), we use 
tar+gz on OS X as on any unix platform, that's why --use-zip should not 
be used.

Cheers,
Simon

Is there some reason not to use R CMD build packagename --binary  
--use-zip?
Yes, as Eliah pointed out (I wondered why, now I see why :)), we use 
tar+gz on OS X as on any unix platform, that's why --use-zip should not 
be used.

Cheers,
Simon
Ok, I just checked and R CMD build ... -binary builds the tar.gz file
for you.  Is there some reason you should not do this?

Hadley

Ok, I just checked and R CMD build ... -binary builds the tar.gz file 
for you.  Is there some reason you should not do this?
No - that's the official way to build a binary package.

Cheers,
Simon
Hello,

I have the following error compiling R-devel since the 2004-12-09 version.
I am using a nightly compile script that worked well until this date, and
I changed nothing to my development environment. What can be the problem ?

Thank you,
Jean

ld: multiple definitions of symbol _R_AccuracyInfo
CConverters.lo definition of _R_AccuracyInfo in section (__DATA,__common)
CommandLineArgs.lo definition of _R_AccuracyInfo in section (__DATA,__common)
Rdynload.lo definition of _R_AccuracyInfo in section (__DATA,__common)
Renviron.lo definition of _R_AccuracyInfo in section (__DATA,__common)
RNG.lo definition of _R_AccuracyInfo in section (__DATA,__common)
apply.lo definition of _R_AccuracyInfo in section (__DATA,__common)
arithmetic.lo definition of _R_AccuracyInfo in section (__DATA,__common)
array.lo definition of _R_AccuracyInfo in section (__DATA,__common)
attrib.lo definition of _R_AccuracyInfo in section (__DATA,__common)
base.lo definition of _R_AccuracyInfo in section (__DATA,__common)
bind.lo definition of _R_AccuracyInfo in section (__DATA,__common)
builtin.lo definition of _R_AccuracyInfo in section (__DATA,__common)
character.lo definition of _R_AccuracyInfo in section (__DATA,__common)
coerce.lo definition of _R_AccuracyInfo in section (__DATA,__common)
colors.lo definition of _R_AccuracyInfo in section (__DATA,__common)
complex.lo definition of _R_AccuracyInfo in section (__DATA,__common)
connections.lo definition of _R_AccuracyInfo in section (__DATA,__common)
context.lo definition of _R_AccuracyInfo in section (__DATA,__common)
cov.lo definition of _R_AccuracyInfo in section (__DATA,__common)
cum.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dcf.lo definition of _R_AccuracyInfo in section (__DATA,__common)
datetime.lo definition of _R_AccuracyInfo in section (__DATA,__common)
debug.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devPS.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devPicTeX.lo definition of _R_AccuracyInfo in section (__DATA,__common)
deparse.lo definition of _R_AccuracyInfo in section (__DATA,__common)
deriv.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devices.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dotcode.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dounzip.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dstruct.lo definition of _R_AccuracyInfo in section (__DATA,__common)
duplicate.lo definition of _R_AccuracyInfo in section (__DATA,__common)
engine.lo definition of _R_AccuracyInfo in section (__DATA,__common)
envir.lo definition of _R_AccuracyInfo in section (__DATA,__common)
errors.lo definition of _R_AccuracyInfo in section (__DATA,__common)
eval.lo definition of _R_AccuracyInfo in section (__DATA,__common)
format.lo definition of _R_AccuracyInfo in section (__DATA,__common)
fourier.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gevents.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gram.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gram-ex.lo definition of _R_AccuracyInfo in section (__DATA,__common)
graphics.lo definition of _R_AccuracyInfo in section (__DATA,__common)
identical.lo definition of _R_AccuracyInfo in section (__DATA,__common)
internet.lo definition of _R_AccuracyInfo in section (__DATA,__common)
iosupport.lo definition of _R_AccuracyInfo in section (__DATA,__common)
lapack.lo definition of _R_AccuracyInfo in section (__DATA,__common)
list.lo definition of _R_AccuracyInfo in section (__DATA,__common)
logic.lo definition of _R_AccuracyInfo in section (__DATA,__common)
main.lo definition of _R_AccuracyInfo in section (__DATA,__common)
match.lo definition of _R_AccuracyInfo in section (__DATA,__common)
memory.lo definition of _R_AccuracyInfo in section (__DATA,__common)
model.lo definition of _R_AccuracyInfo in section (__DATA,__common)
names.lo definition of _R_AccuracyInfo in section (__DATA,__common)
objects.lo definition of _R_AccuracyInfo in section (__DATA,__common)
optim.lo definition of _R_AccuracyInfo in section (__DATA,__common)
optimize.lo definition of _R_AccuracyInfo in section (__DATA,__common)
options.lo definition of _R_AccuracyInfo in section (__DATA,__common)
par.lo definition of _R_AccuracyInfo in section (__DATA,__common)
paste.lo definition of _R_AccuracyInfo in section (__DATA,__common)
pcre.lo definition of _R_AccuracyInfo in section (__DATA,__common)
platform.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plot.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plot3d.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plotmath.lo definition of _R_AccuracyInfo in section (__DATA,__common)
print.lo definition of _R_AccuracyInfo in section (__DATA,__common)
printarray.lo definition of _R_AccuracyInfo in section (__DATA,__common)
printvector.lo definition of _R_AccuracyInfo in section (__DATA,__common)
printutils.lo definition of _R_AccuracyInfo in section (__DATA,__common)
qsort.lo definition of _R_AccuracyInfo in section (__DATA,__common)
random.lo definition of _R_AccuracyInfo in section (__DATA,__common)
registration.lo definition of _R_AccuracyInfo in section (__DATA,__common)
relop.lo definition of _R_AccuracyInfo in section (__DATA,__common)
saveload.lo definition of _R_AccuracyInfo in section (__DATA,__common)
scan.lo definition of _R_AccuracyInfo in section (__DATA,__common)
seq.lo definition of _R_AccuracyInfo in section (__DATA,__common)
serialize.lo definition of _R_AccuracyInfo in section (__DATA,__common)
size.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sort.lo definition of _R_AccuracyInfo in section (__DATA,__common)
source.lo definition of _R_AccuracyInfo in section (__DATA,__common)
split.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sprintf.lo definition of _R_AccuracyInfo in section (__DATA,__common)
startup.lo definition of _R_AccuracyInfo in section (__DATA,__common)
subassign.lo definition of _R_AccuracyInfo in section (__DATA,__common)
subscript.lo definition of _R_AccuracyInfo in section (__DATA,__common)
subset.lo definition of _R_AccuracyInfo in section (__DATA,__common)
summary.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sysutils.lo definition of _R_AccuracyInfo in section (__DATA,__common)
unique.lo definition of _R_AccuracyInfo in section (__DATA,__common)
util.lo definition of _R_AccuracyInfo in section (__DATA,__common)
version.lo definition of _R_AccuracyInfo in section (__DATA,__common)
vfonts.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/X11.lo definition of _R_AccuracyInfo in section (__DATA,__common)
/usr/bin/libtool: internal link edit command failed
../unix/aqua.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/devQuartz.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/dynload.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/edit.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/stubs.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/sys-std.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/sys-unix.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/system.lo definition of _R_AccuracyInfo in section (__DATA,__common)
make[3]: *** [libR.dylib] Error 1
make[2]: *** [R] Error 2
make[1]: *** [R] Error 1
make: *** [R] Error 1
Jean Thioulouse - Labo. BBE, UMR CNRS 5558, Equipe "Ecologie Statistique"
Universite Lyon 1,  Batiment G. Mendel, 69622 Villeurbanne Cedex,  France
Tel: (33) 4 72 43 27 56                           Fax: (33) 4 72 43 27 56
                 http://pbil.univ-lyon1.fr/JTHome.html
I guess what thi sis, I will fix later this afternoon as I'm giving 
lectures in 5 mins.
stefano

Hello,

I have the following error compiling R-devel since the 2004-12-09 
version.
I am using a nightly compile script that worked well until this date, 
and
I changed nothing to my development environment. What can be the 
problem ?

Thank you,
Jean

ld: multiple definitions of symbol _R_AccuracyInfo
CConverters.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
CommandLineArgs.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
Rdynload.lo definition of _R_AccuracyInfo in section (__DATA,__common)
Renviron.lo definition of _R_AccuracyInfo in section (__DATA,__common)
RNG.lo definition of _R_AccuracyInfo in section (__DATA,__common)
apply.lo definition of _R_AccuracyInfo in section (__DATA,__common)
arithmetic.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
array.lo definition of _R_AccuracyInfo in section (__DATA,__common)
attrib.lo definition of _R_AccuracyInfo in section (__DATA,__common)
base.lo definition of _R_AccuracyInfo in section (__DATA,__common)
bind.lo definition of _R_AccuracyInfo in section (__DATA,__common)
builtin.lo definition of _R_AccuracyInfo in section (__DATA,__common)
character.lo definition of _R_AccuracyInfo in section (__DATA,__common)
coerce.lo definition of _R_AccuracyInfo in section (__DATA,__common)
colors.lo definition of _R_AccuracyInfo in section (__DATA,__common)
complex.lo definition of _R_AccuracyInfo in section (__DATA,__common)
connections.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
context.lo definition of _R_AccuracyInfo in section (__DATA,__common)
cov.lo definition of _R_AccuracyInfo in section (__DATA,__common)
cum.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dcf.lo definition of _R_AccuracyInfo in section (__DATA,__common)
datetime.lo definition of _R_AccuracyInfo in section (__DATA,__common)
debug.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devPS.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devPicTeX.lo definition of _R_AccuracyInfo in section (__DATA,__common)
deparse.lo definition of _R_AccuracyInfo in section (__DATA,__common)
deriv.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devices.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dotcode.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dounzip.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dstruct.lo definition of _R_AccuracyInfo in section (__DATA,__common)
duplicate.lo definition of _R_AccuracyInfo in section (__DATA,__common)
engine.lo definition of _R_AccuracyInfo in section (__DATA,__common)
envir.lo definition of _R_AccuracyInfo in section (__DATA,__common)
errors.lo definition of _R_AccuracyInfo in section (__DATA,__common)
eval.lo definition of _R_AccuracyInfo in section (__DATA,__common)
format.lo definition of _R_AccuracyInfo in section (__DATA,__common)
fourier.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gevents.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gram.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gram-ex.lo definition of _R_AccuracyInfo in section (__DATA,__common)
graphics.lo definition of _R_AccuracyInfo in section (__DATA,__common)
identical.lo definition of _R_AccuracyInfo in section (__DATA,__common)
internet.lo definition of _R_AccuracyInfo in section (__DATA,__common)
iosupport.lo definition of _R_AccuracyInfo in section (__DATA,__common)
lapack.lo definition of _R_AccuracyInfo in section (__DATA,__common)
list.lo definition of _R_AccuracyInfo in section (__DATA,__common)
logic.lo definition of _R_AccuracyInfo in section (__DATA,__common)
main.lo definition of _R_AccuracyInfo in section (__DATA,__common)
match.lo definition of _R_AccuracyInfo in section (__DATA,__common)
memory.lo definition of _R_AccuracyInfo in section (__DATA,__common)
model.lo definition of _R_AccuracyInfo in section (__DATA,__common)
names.lo definition of _R_AccuracyInfo in section (__DATA,__common)
objects.lo definition of _R_AccuracyInfo in section (__DATA,__common)
optim.lo definition of _R_AccuracyInfo in section (__DATA,__common)
optimize.lo definition of _R_AccuracyInfo in section (__DATA,__common)
options.lo definition of _R_AccuracyInfo in section (__DATA,__common)
par.lo definition of _R_AccuracyInfo in section (__DATA,__common)
paste.lo definition of _R_AccuracyInfo in section (__DATA,__common)
pcre.lo definition of _R_AccuracyInfo in section (__DATA,__common)
platform.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plot.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plot3d.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plotmath.lo definition of _R_AccuracyInfo in section (__DATA,__common)
print.lo definition of _R_AccuracyInfo in section (__DATA,__common)
printarray.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
printvector.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
printutils.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
qsort.lo definition of _R_AccuracyInfo in section (__DATA,__common)
random.lo definition of _R_AccuracyInfo in section (__DATA,__common)
registration.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
relop.lo definition of _R_AccuracyInfo in section (__DATA,__common)
saveload.lo definition of _R_AccuracyInfo in section (__DATA,__common)
scan.lo definition of _R_AccuracyInfo in section (__DATA,__common)
seq.lo definition of _R_AccuracyInfo in section (__DATA,__common)
serialize.lo definition of _R_AccuracyInfo in section (__DATA,__common)
size.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sort.lo definition of _R_AccuracyInfo in section (__DATA,__common)
source.lo definition of _R_AccuracyInfo in section (__DATA,__common)
split.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sprintf.lo definition of _R_AccuracyInfo in section (__DATA,__common)
startup.lo definition of _R_AccuracyInfo in section (__DATA,__common)
subassign.lo definition of _R_AccuracyInfo in section (__DATA,__common)
subscript.lo definition of _R_AccuracyInfo in section (__DATA,__common)
subset.lo definition of _R_AccuracyInfo in section (__DATA,__common)
summary.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sysutils.lo definition of _R_AccuracyInfo in section (__DATA,__common)
unique.lo definition of _R_AccuracyInfo in section (__DATA,__common)
util.lo definition of _R_AccuracyInfo in section (__DATA,__common)
version.lo definition of _R_AccuracyInfo in section (__DATA,__common)
vfonts.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/X11.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
/usr/bin/libtool: internal link edit command failed
../unix/aqua.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/devQuartz.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/dynload.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/edit.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/stubs.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/sys-std.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/sys-unix.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/system.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
make[3]: *** [libR.dylib] Error 1
make[2]: *** [R] Error 2
make[1]: *** [R] Error 1
make: *** [R] Error 1

-- 
Jean Thioulouse - Labo. BBE, UMR CNRS 5558, Equipe "Ecologie 
Statistique"
Universite Lyon 1,  Batiment G. Mendel, 69622 Villeurbanne Cedex,  
France
Tel: (33) 4 72 43 27 56                           Fax: (33) 4 72 43 27 
56
                 http://pbil.univ-lyon1.fr/JTHome.html

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Somebody defined a global variable in Defn.h without making it an 
extern. I'm mostly surprised at how its managed to escape notice for 
the last 5 days.

I guess what thi sis, I will fix later this afternoon as I'm giving 
lectures in 5 mins.
stefano

On Dec 15, 2004, at 10:34 AM, jtnews1@biomserv.univ-lyon1.fr wrote:

Hello,

I have the following error compiling R-devel since the 2004-12-09 
version.
I am using a nightly compile script that worked well until this date, 
and
I changed nothing to my development environment. What can be the 
problem ?

Thank you,
Jean

ld: multiple definitions of symbol _R_AccuracyInfo
CConverters.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
CommandLineArgs.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
Rdynload.lo definition of _R_AccuracyInfo in section (__DATA,__common)
Renviron.lo definition of _R_AccuracyInfo in section (__DATA,__common)
RNG.lo definition of _R_AccuracyInfo in section (__DATA,__common)
apply.lo definition of _R_AccuracyInfo in section (__DATA,__common)
arithmetic.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
array.lo definition of _R_AccuracyInfo in section (__DATA,__common)
attrib.lo definition of _R_AccuracyInfo in section (__DATA,__common)
base.lo definition of _R_AccuracyInfo in section (__DATA,__common)
bind.lo definition of _R_AccuracyInfo in section (__DATA,__common)
builtin.lo definition of _R_AccuracyInfo in section (__DATA,__common)
character.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
coerce.lo definition of _R_AccuracyInfo in section (__DATA,__common)
colors.lo definition of _R_AccuracyInfo in section (__DATA,__common)
complex.lo definition of _R_AccuracyInfo in section (__DATA,__common)
connections.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
context.lo definition of _R_AccuracyInfo in section (__DATA,__common)
cov.lo definition of _R_AccuracyInfo in section (__DATA,__common)
cum.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dcf.lo definition of _R_AccuracyInfo in section (__DATA,__common)
datetime.lo definition of _R_AccuracyInfo in section (__DATA,__common)
debug.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devPS.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devPicTeX.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
deparse.lo definition of _R_AccuracyInfo in section (__DATA,__common)
deriv.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devices.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dotcode.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dounzip.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dstruct.lo definition of _R_AccuracyInfo in section (__DATA,__common)
duplicate.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
engine.lo definition of _R_AccuracyInfo in section (__DATA,__common)
envir.lo definition of _R_AccuracyInfo in section (__DATA,__common)
errors.lo definition of _R_AccuracyInfo in section (__DATA,__common)
eval.lo definition of _R_AccuracyInfo in section (__DATA,__common)
format.lo definition of _R_AccuracyInfo in section (__DATA,__common)
fourier.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gevents.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gram.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gram-ex.lo definition of _R_AccuracyInfo in section (__DATA,__common)
graphics.lo definition of _R_AccuracyInfo in section (__DATA,__common)
identical.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
internet.lo definition of _R_AccuracyInfo in section (__DATA,__common)
iosupport.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
lapack.lo definition of _R_AccuracyInfo in section (__DATA,__common)
list.lo definition of _R_AccuracyInfo in section (__DATA,__common)
logic.lo definition of _R_AccuracyInfo in section (__DATA,__common)
main.lo definition of _R_AccuracyInfo in section (__DATA,__common)
match.lo definition of _R_AccuracyInfo in section (__DATA,__common)
memory.lo definition of _R_AccuracyInfo in section (__DATA,__common)
model.lo definition of _R_AccuracyInfo in section (__DATA,__common)
names.lo definition of _R_AccuracyInfo in section (__DATA,__common)
objects.lo definition of _R_AccuracyInfo in section (__DATA,__common)
optim.lo definition of _R_AccuracyInfo in section (__DATA,__common)
optimize.lo definition of _R_AccuracyInfo in section (__DATA,__common)
options.lo definition of _R_AccuracyInfo in section (__DATA,__common)
par.lo definition of _R_AccuracyInfo in section (__DATA,__common)
paste.lo definition of _R_AccuracyInfo in section (__DATA,__common)
pcre.lo definition of _R_AccuracyInfo in section (__DATA,__common)
platform.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plot.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plot3d.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plotmath.lo definition of _R_AccuracyInfo in section (__DATA,__common)
print.lo definition of _R_AccuracyInfo in section (__DATA,__common)
printarray.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
printvector.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
printutils.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
qsort.lo definition of _R_AccuracyInfo in section (__DATA,__common)
random.lo definition of _R_AccuracyInfo in section (__DATA,__common)
registration.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
relop.lo definition of _R_AccuracyInfo in section (__DATA,__common)
saveload.lo definition of _R_AccuracyInfo in section (__DATA,__common)
scan.lo definition of _R_AccuracyInfo in section (__DATA,__common)
seq.lo definition of _R_AccuracyInfo in section (__DATA,__common)
serialize.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
size.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sort.lo definition of _R_AccuracyInfo in section (__DATA,__common)
source.lo definition of _R_AccuracyInfo in section (__DATA,__common)
split.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sprintf.lo definition of _R_AccuracyInfo in section (__DATA,__common)
startup.lo definition of _R_AccuracyInfo in section (__DATA,__common)
subassign.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
subscript.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
subset.lo definition of _R_AccuracyInfo in section (__DATA,__common)
summary.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sysutils.lo definition of _R_AccuracyInfo in section (__DATA,__common)
unique.lo definition of _R_AccuracyInfo in section (__DATA,__common)
util.lo definition of _R_AccuracyInfo in section (__DATA,__common)
version.lo definition of _R_AccuracyInfo in section (__DATA,__common)
vfonts.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/X11.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
/usr/bin/libtool: internal link edit command failed
../unix/aqua.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/devQuartz.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/dynload.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/edit.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/stubs.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/sys-std.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/sys-unix.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/system.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
make[3]: *** [libR.dylib] Error 1
make[2]: *** [R] Error 2
make[1]: *** [R] Error 1
make: *** [R] Error 1

-- 
Jean Thioulouse - Labo. BBE, UMR CNRS 5558, Equipe "Ecologie 
Statistique"
Universite Lyon 1,  Batiment G. Mendel, 69622 Villeurbanne Cedex,  
France
Tel: (33) 4 72 43 27 56                           Fax: (33) 4 72 43 
27 56
                 http://pbil.univ-lyon1.fr/JTHome.html

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

---
Byron Ellis (ellis@stat.harvard.edu)
"Oook" -- The Librarian
yes, you also need to add the declaration to src/main.c to make 
everything work.
Committed now.
stefano

Somebody defined a global variable in Defn.h without making it an 
extern. I'm mostly surprised at how its managed to escape notice for 
the last 5 days.

On Dec 15, 2004, at 1:53 AM, stefano iacus wrote:

I guess what thi sis, I will fix later this afternoon as I'm giving 
lectures in 5 mins.
stefano

On Dec 15, 2004, at 10:34 AM, jtnews1@biomserv.univ-lyon1.fr wrote:

Hello,

I have the following error compiling R-devel since the 2004-12-09 
version.
I am using a nightly compile script that worked well until this 
date, and
I changed nothing to my development environment. What can be the 
problem ?

Thank you,
Jean

ld: multiple definitions of symbol _R_AccuracyInfo
CConverters.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
CommandLineArgs.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
Rdynload.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
Renviron.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
RNG.lo definition of _R_AccuracyInfo in section (__DATA,__common)
apply.lo definition of _R_AccuracyInfo in section (__DATA,__common)
arithmetic.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
array.lo definition of _R_AccuracyInfo in section (__DATA,__common)
attrib.lo definition of _R_AccuracyInfo in section (__DATA,__common)
base.lo definition of _R_AccuracyInfo in section (__DATA,__common)
bind.lo definition of _R_AccuracyInfo in section (__DATA,__common)
builtin.lo definition of _R_AccuracyInfo in section (__DATA,__common)
character.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
coerce.lo definition of _R_AccuracyInfo in section (__DATA,__common)
colors.lo definition of _R_AccuracyInfo in section (__DATA,__common)
complex.lo definition of _R_AccuracyInfo in section (__DATA,__common)
connections.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
context.lo definition of _R_AccuracyInfo in section (__DATA,__common)
cov.lo definition of _R_AccuracyInfo in section (__DATA,__common)
cum.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dcf.lo definition of _R_AccuracyInfo in section (__DATA,__common)
datetime.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
debug.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devPS.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devPicTeX.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
deparse.lo definition of _R_AccuracyInfo in section (__DATA,__common)
deriv.lo definition of _R_AccuracyInfo in section (__DATA,__common)
devices.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dotcode.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dounzip.lo definition of _R_AccuracyInfo in section (__DATA,__common)
dstruct.lo definition of _R_AccuracyInfo in section (__DATA,__common)
duplicate.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
engine.lo definition of _R_AccuracyInfo in section (__DATA,__common)
envir.lo definition of _R_AccuracyInfo in section (__DATA,__common)
errors.lo definition of _R_AccuracyInfo in section (__DATA,__common)
eval.lo definition of _R_AccuracyInfo in section (__DATA,__common)
format.lo definition of _R_AccuracyInfo in section (__DATA,__common)
fourier.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gevents.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gram.lo definition of _R_AccuracyInfo in section (__DATA,__common)
gram-ex.lo definition of _R_AccuracyInfo in section (__DATA,__common)
graphics.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
identical.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
internet.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
iosupport.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
lapack.lo definition of _R_AccuracyInfo in section (__DATA,__common)
list.lo definition of _R_AccuracyInfo in section (__DATA,__common)
logic.lo definition of _R_AccuracyInfo in section (__DATA,__common)
main.lo definition of _R_AccuracyInfo in section (__DATA,__common)
match.lo definition of _R_AccuracyInfo in section (__DATA,__common)
memory.lo definition of _R_AccuracyInfo in section (__DATA,__common)
model.lo definition of _R_AccuracyInfo in section (__DATA,__common)
names.lo definition of _R_AccuracyInfo in section (__DATA,__common)
objects.lo definition of _R_AccuracyInfo in section (__DATA,__common)
optim.lo definition of _R_AccuracyInfo in section (__DATA,__common)
optimize.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
options.lo definition of _R_AccuracyInfo in section (__DATA,__common)
par.lo definition of _R_AccuracyInfo in section (__DATA,__common)
paste.lo definition of _R_AccuracyInfo in section (__DATA,__common)
pcre.lo definition of _R_AccuracyInfo in section (__DATA,__common)
platform.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
plot.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plot3d.lo definition of _R_AccuracyInfo in section (__DATA,__common)
plotmath.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
print.lo definition of _R_AccuracyInfo in section (__DATA,__common)
printarray.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
printvector.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
printutils.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
qsort.lo definition of _R_AccuracyInfo in section (__DATA,__common)
random.lo definition of _R_AccuracyInfo in section (__DATA,__common)
registration.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
relop.lo definition of _R_AccuracyInfo in section (__DATA,__common)
saveload.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
scan.lo definition of _R_AccuracyInfo in section (__DATA,__common)
seq.lo definition of _R_AccuracyInfo in section (__DATA,__common)
serialize.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
size.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sort.lo definition of _R_AccuracyInfo in section (__DATA,__common)
source.lo definition of _R_AccuracyInfo in section (__DATA,__common)
split.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sprintf.lo definition of _R_AccuracyInfo in section (__DATA,__common)
startup.lo definition of _R_AccuracyInfo in section (__DATA,__common)
subassign.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
subscript.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
subset.lo definition of _R_AccuracyInfo in section (__DATA,__common)
summary.lo definition of _R_AccuracyInfo in section (__DATA,__common)
sysutils.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
unique.lo definition of _R_AccuracyInfo in section (__DATA,__common)
util.lo definition of _R_AccuracyInfo in section (__DATA,__common)
version.lo definition of _R_AccuracyInfo in section (__DATA,__common)
vfonts.lo definition of _R_AccuracyInfo in section (__DATA,__common)
../unix/X11.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
/usr/bin/libtool: internal link edit command failed
../unix/aqua.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/devQuartz.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/dynload.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/edit.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/stubs.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/sys-std.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/sys-unix.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
../unix/system.lo definition of _R_AccuracyInfo in section 
(__DATA,__common)
make[3]: *** [libR.dylib] Error 1
make[2]: *** [R] Error 2
make[1]: *** [R] Error 1
make: *** [R] Error 1

-- 
Jean Thioulouse - Labo. BBE, UMR CNRS 5558, Equipe "Ecologie 
Statistique"
Universite Lyon 1,  Batiment G. Mendel, 69622 Villeurbanne Cedex,  
France
Tel: (33) 4 72 43 27 56                           Fax: (33) 4 72 43 
27 56
                 http://pbil.univ-lyon1.fr/JTHome.html

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac

---
Byron Ellis (ellis@stat.harvard.edu)
"Oook" -- The Librarian

_______________________________________________
R-SIG-Mac mailing list
R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac