I did that because the R Gui that I downloaded yesterday (and again
this morning) does not seem to allow me to use the package installer
or manager)
(error message:
Error: could not find function "browse.pkgs"
Error: could not find function "package.manager"
For R in X11 the sessionInfo shows
R version 2.9.0 alpha (2009-03-22 r48193)
i386-apple-darwin8.11.1
locale:
C
attached base packages:
[1] grid stats graphics grDevices utils datasets
methods [8] base
other attached packages:
[1] MASS_7.2-46 Rgraphviz_1.20.0 graph_1.20.0
[4] GPArotation_2008.05-1 psych_1.0-67
loaded via a namespace (and not attached):
[1] cluster_1.11.12 tools_2.9.0
For R.app (GUI) the sessionInfo() is
R version 2.9.0 alpha (2009-03-22 r48193)
i386-apple-darwin8.11.1
locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] psych_1.0-67
The Gui is
R.app GUI 1.28-devel (5355 Leopard build 32-bit), S.Urbanek &
S.M.Iacus, ? R Foundation for Statistical Computing, 2008
Best,
Bill
Kasper
On Mar 23, 2009, at 6:52 , William Revelle wrote:
Dear Simon and other Mac Gui developers,
I have been testing the psych package for 2.9.0 and have found an
unrelated problem with the GUI when it is interacting with
Rgraphviz.
If I run R.app directly from the X11 window, I can load and run
Rgraphviz with no problem.
But, when I try loading the Rgraphviz package by
library(Rgraphviz) , the Gui crashes;
*** caught segfault ***
address 0x656c7574, cause 'memory not mapped'
Traceback:
1: .Call("Rgraphviz_init", PACKAGE = "Rgraphviz")
2: fun(...)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(expr, error = function(e) { call <-
conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]],
quote(doTryCatch))) call <- sys.call(-4L) dcall <-
deparse(call)[1L] prefix <- paste("Error in", dcall, ": ")
LONG <- 75L msg <- conditionMessage(e) sm <-
strsplit(msg, "\n")[[1L]] if (14L + nchar(dcall, type =
"w") + nchar(sm[1L], type = "w") > LONG) prefix <-
paste(prefix, "\n ", sep = "") } else prefix <- "Error : "
msg <- paste(prefix, conditionMessage(e), "\n", sep =
"") .Internal(seterrmessage(msg[1L])) if (!silent &&
identical(getOption("show.error.messages"), TRUE)) { cat(msg, file
= stderr()) .Internal(printDeferredWarnings()) }
invisible(structure(msg, class = "try-error"))})
7: try({ fun(...) NULL})
8: runHook(".onLoad", package, env, package.lib, package)
9: loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
keep.source)
10: doTryCatch(return(expr), name, parentenv, handler)
11: tryCatchOne(expr, names, parentenv, handlers[[1L]])
12: tryCatchList(expr, classes, parentenv, handlers)
13: tryCatch(expr, error = function(e) { call <- conditionCall(e)
if (!is.null(call)) { if (identical(call[[1L]],
quote(doTryCatch))) call <- sys.call(-4L) dcall <-
deparse(call)[1L] prefix <- paste("Error in", dcall, ": ")
LONG <- 75L msg <- conditionMessage(e) sm <-
strsplit(msg, "\n")[[1L]] if (14L + nchar(dcall, type =
"w") + nchar(sm[1L], type = "w") > LONG) prefix <-
paste(prefix, "\n ", sep = "") } else prefix <- "Error : "
msg <- paste(prefix, conditionMessage(e), "\n", sep =
"") .Internal(seterrmessage(msg[1L])) if (!silent &&
identical(getOption("show.error.messages"), TRUE)) { cat(msg, file
= stderr()) .Internal(printDeferredWarnings()) }
invisible(structure(msg, class = "try-error"))})
14: try({ ns <- loadNamespace(package, c(which.lib.loc,
lib.loc), keep.source = keep.source) dataPath <-
file.path(which.lib.loc, package, "data") env <-
attachNamespace(ns, pos = pos, dataPath = dataPath)})
15: library(Rgraphviz)
my sessionInfo is
R version 2.9.0 alpha (2009-03-21 r48181)
i386-apple-darwin8.11.1
locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] psych_1.0-67
R 2.8.1 GUI 1.27 Tiger build 32-bit (5372)
(I have the identical problem with
R.app GUI 1.28-devel (5355 Leopard build 32-bit),)
In that this does not happen in the R.app itself, but with the Mac
Gui, I am reporting it here.
Thanks again for the wonderful GUI. My students who use PCs are
very jealous.
Bill
--
William Revelle http://personality-project.org/revelle.html
Professor http://personality-project.org/personality.html
Department of Psychology http://www.wcas.northwestern.edu/psych/
Northwestern University http://www.northwestern.edu/
Attend ISSID/ARP:2009 http://issid.org/issid.2009/