Dear list I tried to install rgdal from source and was running into troubles. System: OS X 10.4.6, PPC R version: 2.3.0 GDAL version: 1.3.1.0 (installed from fink) PROJ.4 version: 4.4.8-4 (installed from fink) proj_api.h exists in /sw/include libproj.a exists in /sw/lib therefor I used the following commands to install: export CPPFLAGS="-I/sw/include" export LDFLAGS="-L/sw/lib" R CMD INSTALL rgdal_0.4-4.tar.gz what produced: ------------------------------------------------------------------------------------------------------------------------- * Installing *source* package 'rgdal' ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for pj_init_plus in -lproj... yes checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking proj_api.h usability... yes checking proj_api.h presence... yes checking for proj_api.h... yes configure: creating ./config.status config.status: creating src/Makevars ** libs ** arch - ppc g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/sw/include/gdal1 -g -DRGDALDEBUG -I/usr/local/include -fPIC -fno-common -g -O2 -c gdal-bindings.cpp -o gdal-bindings.o g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/sw/include/gdal1 -g -DRGDALDEBUG -I/usr/local/include -fPIC -fno-common -g -O2 -c ogr_geom.cpp -o ogr_geom.o g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/sw/include/gdal1 -g -DRGDALDEBUG -I/usr/local/include -fPIC -fno-common -g -O2 -c ogr_proj.cpp -o ogr_proj.o g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/sw/include/gdal1 -g -DRGDALDEBUG -I/usr/local/include -fPIC -fno-common -g -O2 -c ogrsource.cpp -o ogrsource.o gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/sw/include/gdal1 -g -DRGDALDEBUG -I/usr/local/include -fPIC -fno-common -g -O2 -std=gnu99 -c projectit.c -o projectit.o projectit.c:6:22: error: proj_api.h: No such file or directory projectit.c: In function 'project': projectit.c:16: error: 'projUV' undeclared (first use in this function) projectit.c:16: error: (Each undeclared identifier is reported only once projectit.c:16: error: for each function it appears in.) projectit.c:16: error: syntax error before 'p' projectit.c:17: error: 'projPJ' undeclared (first use in this function) projectit.c:19: error: 'pj' undeclared (first use in this function) projectit.c:19: warning: implicit declaration of function 'pj_init_plus' projectit.c:20: warning: implicit declaration of function 'pj_strerrno' projectit.c:20: warning: implicit declaration of function 'pj_get_errno_ref' projectit.c:20: error: invalid type argument of 'unary *' projectit.c:20: warning: passing argument 1 of 'Rf_error' makes pointer from integer without a cast projectit.c:29: error: 'p' undeclared (first use in this function) projectit.c:31: error: 'DEG_TO_RAD' undeclared (first use in this function) projectit.c:33: warning: implicit declaration of function 'pj_fwd' projectit.c:35: warning: implicit declaration of function 'pj_free' projectit.c:36: error: invalid type argument of 'unary *' projectit.c:36: warning: passing argument 1 of 'Rf_error' makes pointer from integer without a cast projectit.c: In function 'project_inv': projectit.c:54: error: 'projUV' undeclared (first use in this function) projectit.c:54: error: syntax error before 'p' projectit.c:55: error: 'projPJ' undeclared (first use in this function) projectit.c:57: error: 'pj' undeclared (first use in this function) projectit.c:58: error: invalid type argument of 'unary *' projectit.c:58: warning: passing argument 1 of 'Rf_error' makes pointer from integer without a cast projectit.c:66: error: 'p' undeclared (first use in this function) projectit.c:68: warning: implicit declaration of function 'pj_inv' projectit.c:71: error: invalid type argument of 'unary *' projectit.c:71: warning: passing argument 1 of 'Rf_error' makes pointer from integer without a cast projectit.c:73: error: 'RAD_TO_DEG' undeclared (first use in this function) projectit.c: In function 'transform': projectit.c:88: error: 'projUV' undeclared (first use in this function) projectit.c:88: error: syntax error before 'p' projectit.c:89: error: 'projPJ' undeclared (first use in this function) projectit.c:92: error: 'fromPJ' undeclared (first use in this function) projectit.c:93: error: invalid type argument of 'unary *' projectit.c:93: warning: passing argument 1 of 'Rf_error' makes pointer from integer without a cast projectit.c:95: error: 'toPJ' undeclared (first use in this function) projectit.c:96: error: invalid type argument of 'unary *' projectit.c:96: warning: passing argument 1 of 'Rf_error' makes pointer from integer without a cast projectit.c:105: warning: implicit declaration of function 'pj_get_def' projectit.c:105: warning: passing argument 1 of 'Rf_mkChar' makes pointer from integer without a cast projectit.c:108: warning: passing argument 1 of 'Rf_mkChar' makes pointer from integer without a cast projectit.c:115: error: 'p' undeclared (first use in this function) projectit.c:120: warning: implicit declaration of function 'pj_is_latlong' projectit.c:121: error: 'DEG_TO_RAD' undeclared (first use in this function) projectit.c:125: warning: implicit declaration of function 'pj_transform' projectit.c:134: error: invalid type argument of 'unary *' projectit.c:134: warning: passing argument 1 of 'Rf_error' makes pointer from integer without a cast projectit.c:137: error: 'RAD_TO_DEG' undeclared (first use in this function) projectit.c: In function 'checkCRSArgs': projectit.c:153: error: 'projPJ' undeclared (first use in this function) projectit.c:153: error: syntax error before 'pj' projectit.c:159: error: 'pj' undeclared (first use in this function) projectit.c:162: error: invalid type argument of 'unary *' projectit.c:162: warning: passing argument 1 of 'Rf_mkChar' makes pointer from integer without a cast projectit.c:169: warning: passing argument 1 of 'Rf_mkChar' makes pointer from integer without a cast make: *** [projectit.o] Error 1 chmod: getting attributes of `/Library/Frameworks/R.framework/Versions/2.3/Resources/library/rgdal/libs/ppc/*': No such file or directory ERROR: compilation failed for package 'rgdal' ** Removing '/Library/Frameworks/R.framework/Versions/2.3/Resources/library/rgdal' ------------------------------------------------------------------------------------------------------------------------- Apparently it still cannot find the proj_api.h, although the checks were ok. Any hints what I do wrong? Thanks and regards Simon PS: Is there a possibility or function to search the mail archive?
Problems installing rgdal from source
5 messages · Paul Roebuck, sj, Simon Urbanek
On Thu, 8 Jun 2006, sj wrote:
I tried to install rgdal from source and was running into troubles. System: OS X 10.4.6, PPC R version: 2.3.0 GDAL version: 1.3.1.0 (installed from fink) PROJ.4 version: 4.4.8-4 (installed from fink) proj_api.h exists in /sw/include libproj.a exists in /sw/lib therefor I used the following commands to install: export CPPFLAGS="-I/sw/include" export LDFLAGS="-L/sw/lib" R CMD INSTALL rgdal_0.4-4.tar.gz what produced: [SNIP compilation errors] Apparently it still cannot find the proj_api.h, although the checks were ok.
Is it possible that such a generically named header file actually is completely unrelated to the API in question?
Any hints what I do wrong?
You put FINK on your OS X system and expected it to use it for development with non-FINK software. Ditch FINK and compile what you need yourself. ---------------------------------------------------------- SIGSIG -- signature too long (core dumped)
Thanks for your quick reply.
Apparently it still cannot find the proj_api.h, although the checks were ok.
Is it possible that such a generically named header file actually is completely unrelated to the API in question?
No, proj_api.h: /****************************************************************************** * $Id: proj_api.h,v 1.10 2004/05/04 03:28:01 warmerda Exp $ * * Project: PROJ.4 * Purpose: Public (application) include file for PROJ.4 API, and constants. * Author: Frank Warmerdam, <warmerdam at pobox.com> * ******************************************************************************
Any hints what I do wrong?
You put FINK on your OS X system and expected it to use it for development with non-FINK software. Ditch FINK and compile what you need yourself.
Well, this would be an idea, but it worked quite well for me until now. I compiled things myself before on my Linux box and it took me a great deal of time to figure out all the dependencies, correct versions of dependencies and even sometimes the package/program the requested file resided in. And finally it also ends up in a non standard location (compared to a Linux machine). Perhaps I have a wrong understanding of this, but what Fink basically does, is figuring out and automatically installing the dependencies (of course into a non standard location). So the question is rather, why the configure script resp. the compiler does not find the file any more after the successful checks. Anyhow, I'll give it a try and compile it by hand. Thanks and regards Simon
Problem solved, installation of rgdal succeded.
Any hints what I do wrong?
You put FINK on your OS X system and expected it to use it for development with non-FINK software. Ditch FINK and compile what you need yourself.
Well, this would be an idea, but it worked quite well for me until now. [...] So the question is rather, why the configure script resp. the compiler does not find the file any more after the successful checks. Anyhow, I'll give it a try and compile it by hand.
I compiled and installed PROJ.4 under /usr/local. After this, the installation with R CMD worked smoothly. Surprisingly, there was no need to reinstall GDAL (installed with Fink). Apparently there is somewhere a hardcoded path (this is my interpretation), ignoring the flags. Thanks for your help. Regards Simon
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