Hi, Got a question earlier this week on installing Rgraphviz and I'm having problems. Maybe someone using it on Mac OS can help out here. I pretty much followed the steps on Stefano's site (downloading graphviz-2.2 source, ./configure --without-tcltk, make and sudo make install. Seems to work fine. During the 2nd step, installing Rgraphviz, the problem occurs. Either using R.app or R CMD INSTALL ./Rgraphviz_1.5.0.tar.gz, results in: trying URL `http://www.bioconductor.org/src/contrib/Rgraphviz_1.5.0.tar.gz' Content type `application/x-gzip' length 660978 bytes opened URL ================================================== downloaded 645Kb * Installing *source* package 'Rgraphviz' ... checking for graphviz... checking for dotneato-config... /usr/local/bin/dotneato-config /usr/local/bin/dotneato-config failed ** Removing '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ Rgraphviz' ** Restoring previous '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ Rgraphviz' > Trying the previous version of Rgraphviz_1.4.0 results in the same problem. Found another helpful note in the archives for Linux, but that didn't change anything. Running 'dotneato-config --version' in a terminal returns 2.2 and 'which dotneato-config' returns /usr/local/bin/dotneato-config. This is on 10.3.8, latest R.app (1257) and Xcode 1.5 installed. Any hints? Thanks, Rob
Graphviz again ...
5 messages · elijah wright, Jan de Leeuw, stefano iacus +1 more
I pretty much followed the steps on Stefano's site (downloading graphviz-2.2 source, ./configure --without-tcltk, make and sudo make install. Seems to work fine.
* Installing *source* package 'Rgraphviz' ... checking for graphviz... checking for dotneato-config... /usr/local/bin/dotneato-config /usr/local/bin/dotneato-config failed ** Removing '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/Rgraphviz' ** Restoring previous '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/Rgraphviz'
i wonder if this is related to a problem i had with graphviz a while back. basically, dotneato-config was lying about where its libraries actually are. ;) fixing that fixed a lot of things in the build process. --elijah
Did anyone try to use the frameworks in the pixelglow version of graphviz ?
On Mar 10, 2005, at 10:41 , Rob J Goedman wrote:
Hi, Got a question earlier this week on installing Rgraphviz and I'm having problems. Maybe someone using it on Mac OS can help out here. I pretty much followed the steps on Stefano's site (downloading graphviz-2.2 source, ./configure --without-tcltk, make and sudo make install. Seems to work fine. During the 2nd step, installing Rgraphviz, the problem occurs. Either using R.app or R CMD INSTALL ./Rgraphviz_1.5.0.tar.gz, results in: trying URL `http://www.bioconductor.org/src/contrib/Rgraphviz_1.5.0.tar.gz' Content type `application/x-gzip' length 660978 bytes opened URL ================================================== downloaded 645Kb * Installing *source* package 'Rgraphviz' ... checking for graphviz... checking for dotneato-config... /usr/local/bin/dotneato-config /usr/local/bin/dotneato-config failed ** Removing '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ Rgraphviz' ** Restoring previous '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ Rgraphviz'
Trying the previous version of Rgraphviz_1.4.0 results in the same problem. Found another helpful note in the archives for Linux, but that didn't change anything. Running 'dotneato-config --version' in a terminal returns 2.2 and 'which dotneato-config' returns /usr/local/bin/dotneato-config. This is on 10.3.8, latest R.app (1257) and Xcode 1.5 installed. Any hints? Thanks, Rob
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=== Jan de Leeuw; Distinguished Professor and Chair, UCLA Department of Statistics; Editor: Journal of Multivariate Analysis, Journal of Statistical Software US mail: 8130 Math Sciences Bldg, Box 951554, Los Angeles, CA 90095-1554 phone (310)-825-9550; fax (310)-206-5658; email: deleeuw@stat.ucla.edu homepage: http://gifi.stat.ucla.edu ------------------------------------------------------------------------ ------------------------- No matter where you go, there you are. --- Buckaroo Banzai http://gifi.stat.ucla.edu/sounds/nomatter.au
Emh, effectively I've installed Rgraphviz 1.5.6 on R-devel, but I think is Rgraphviz more than R the problem here. stefano
On 10/mar/05, at 21:04, Jan de Leeuw wrote:
Did anyone try to use the frameworks in the pixelglow version of graphviz ? On Mar 10, 2005, at 10:41 , Rob J Goedman wrote:
Hi, Got a question earlier this week on installing Rgraphviz and I'm having problems. Maybe someone using it on Mac OS can help out here. I pretty much followed the steps on Stefano's site (downloading graphviz-2.2 source, ./configure --without-tcltk, make and sudo make install. Seems to work fine. During the 2nd step, installing Rgraphviz, the problem occurs. Either using R.app or R CMD INSTALL ./Rgraphviz_1.5.0.tar.gz, results in: trying URL `http://www.bioconductor.org/src/contrib/Rgraphviz_1.5.0.tar.gz' Content type `application/x-gzip' length 660978 bytes opened URL ================================================== downloaded 645Kb * Installing *source* package 'Rgraphviz' ... checking for graphviz... checking for dotneato-config... /usr/local/bin/dotneato-config /usr/local/bin/dotneato-config failed ** Removing '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ Rgraphviz' ** Restoring previous '/Library/Frameworks/R.framework/Versions/2.0.1/Resources/library/ Rgraphviz'
Trying the previous version of Rgraphviz_1.4.0 results in the same problem. Found another helpful note in the archives for Linux, but that didn't change anything. Running 'dotneato-config --version' in a terminal returns 2.2 and 'which dotneato-config' returns /usr/local/bin/dotneato-config. This is on 10.3.8, latest R.app (1257) and Xcode 1.5 installed. Any hints? Thanks, Rob
_______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
=== Jan de Leeuw; Distinguished Professor and Chair, UCLA Department of Statistics; Editor: Journal of Multivariate Analysis, Journal of Statistical Software US mail: 8130 Math Sciences Bldg, Box 951554, Los Angeles, CA 90095-1554 phone (310)-825-9550; fax (310)-206-5658; email: deleeuw@stat.ucla.edu homepage: http://gifi.stat.ucla.edu ----------------------------------------------------------------------- -------------------------- No matter where you go, there you are. --- Buckaroo Banzai http://gifi.stat.ucla.edu/sounds/nomatter.au
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1 day later
Just to update for other interested folks. The procedure outlined on Stefano's site to install graphviz-2.2 works fine. Then, select Rgraphviz_1.5.7.tar.gz to install in R. Download it from: ( http://www.bioconductor.org/repository/devel/package/html/ Rgraphviz.html ) This is not (up to yesterday) the version that's on the BioConductor's list of source packages (1.5.0), which didn't work for me. Several folks helped out, thanks a lot, Rob
On Mar 10, 2005, at 10:41 AM, Rob J Goedman wrote:
Hi, Got a question earlier this week on installing Rgraphviz and I'm having problems. Maybe someone using it on Mac OS can help out here. I pretty much followed the steps on Stefano's site (downloading graphviz-2.2 source, ./configure --without-tcltk, make and sudo make install. Seems to work fine. During the 2nd step, installing Rgraphviz, the problem occurs. Either using R.app or R CMD INSTALL ./Rgraphviz_1.5.0.tar.gz, results in: