[R-meta] Goodness of fit test for dose-response meta-analysis
Dear Marimuthu According to the paper cited in the help file for gof() the degrees of freedom only take into account n and p. No mention is made of the covariance matrix of the random effects. The paper is well worth a look as it is much more extensive than what you see after ?gof Michael
On 04/12/2024 20:19, Marimuthu S via R-sig-meta-analysis wrote:
Dear all, I am currently working on random effect one-stage dose-response meta-analysis (DRMA), and I am trying to assess goodness of fit using the R package "dosresmeta". Here are the R code I used and the results: *# Goodness fits statistics for Random effect quadratic polynomial model* library(dosresmeta) data(alcohol_cvd) lin.R <- dosresmeta(formula = logrr ~ dose+I(dose^2), type = type, id = id, ?se = se, cases = cases, n = n,proc = "1stage", data = alcohol_cvd, method="reml", control = list(maxiter =1000))
>*gof(lin.R, fixed =FALSE)* Goodness-of-fit statistics: Deviance test:
D = 19.920 (df = 17), p-value = 0.278???????????? *# Goodness fits statistics for fixed effect quadratic polynomial model* lin.F <- dosresmeta(formula = logrr ~ dose+I(dose^2), type = type, id = id, ?se = se, cases = cases, n = n,proc = "1stage", data = alcohol_cvd, method="fixed")
>*gof(lin.F)* Goodness-of-fit statistics: Deviance test: D = 40.992 (df
= 17), p-value = 0.001 The deviances are different for fixed vs. random but the degrees of freedom are identical. Since the random effect model includes the between study variance-covariance components (which should be estimated),, I expected the degrees of freedom for random effect to be smaller. I would appreciate if anyone?could share their thoughts. Warm Regards, *Marimuthu S,* Ph.D. Student (Biostatistics) <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=emailclient> Virus-free.www.avg.com <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=emailclient> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
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Michael