Hi There,
I have some questions on this package. Basically, I would like to know how the package generate the vcov or variance covariance matrix of the betas while considering the random effects.
In my simulation, for example I am using count data ?Salamanders? which is incorporated in glmmTMB package, and for example I choose the poisson model. In the first case, I thought using the idea from generalized estimating equations to get the variance of beta would give the same answer, but it proves me that the idea has not been successfully replicating the vcov output produced by glmmTMB. Would you be able to explain how the package give the output for vcov output?
So here is my attempt:
fit0 = glmmTMB(count~spp + (1|site), family=poisson)
fit1 = glmer(count~spp + (1|site), family=poisson)
vcov(fit0)
vcov(fit1)
then the output is: