Vignettes RePsychLing
Dear all, dear Hadley, thank you Hadley for proposing the (in hindsight) quite obvious
devtools::install_github("dmbates/RePsychLing", build_vignettes = TRUE)
which brought me on the right track. After fiddling a bit with installing correctly all necessary R-packages in the latest versions (specifically stringi, curl) and some additional software (pandoc, LaTeX), the installation clearly went further: R version 3.2.2 (2015-08-14) -- "Fire Safety" Copyright (C) 2015 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) ...
devtools::install_github("dmbates/RePsychLing", build_vignettes =
TRUE)
Downloading GitHub repo dmbates/RePsychLing at master Installing RePsychLing "C:/PROGRA~1/R/R-32~1.2/bin/x64/R" --no-site-file --no-environ --no-save --no-restore CMD build \ "C:\Users\lorenz\AppData\Local\Temp\RtmpuQICTP\devtools3058b542da6\dmbates-RePsychLing-aec0878" --no-resave-data --no-manual * checking for file 'C:\Users\lorenz\AppData\Local\Temp\RtmpuQICTP\devtools3058b542da6\dmbates-RePsychLing-aec0878/DESCRIPTION' ... OK * preparing 'RePsychLing': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ...Warnung: Ausf?hrung von Kommando '"C:/PROGRA~1/R/R-32~1.2/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' ergab Status 1 ERROR Quitting from lines 322-333 (KBStan.Rmd) Fehler: Verarbeitung der Vignette 'KBStan.Rmd' mit folgender Diagnose fehlgeschlagen: 'mc.cores' > 1 is not supported on Windows Ausf?hrung angehalten Fehler: Command failed (1) Obviously, a multi-core request is made here which does not work on windows (I am sorry that I have no other platform available ...). Can I myself easily circumvent this problem? Or is an adjustment needed in the .Rmd file that catches windows systems and adjusts this request? Many thanks again, Lorenz
On Tue, Dec 8, 2015 at 6:42 AM, <lorenz.gygax at agroscope.admin.ch> wrote:
Dear all, As a user of mixed-models - greatest thanks to all contributors to lme4
specifically! - I have read
with interest the maybe not-so-recent-anymore discussion on how many random
effects can reasonably be included in a mixed model for a given data set. I was intrigued by the use of pca to assess rank deficiency in mixed-models as suggested in "Parsimonous mixed models" by Doug Bates et al. (http://arxiv.org/abs/1506.04967). As suggested there, I wanted to check the vignette(s) for RePsychLing on how to use the rePCA function.
I have followed the instruction on Harald Baayen's site (http://www.sfs.uni-
tuebingen.de/~hbaayen/publications.html):
library(devtools)
devtools::install_github("dmbates/RePsychLing")
vignette(package="RePsychLing")
vignette("PCA", package="RePsychLing")
vignette("KB", package="RePsychLing")
The installation runs without error and seems to be doing fine. When I try to call
the vignettes, though, there is an error telling me that there is no pdf nor html version. Can you tell me what crucial point I am missing here?
Many thanks and regards, Lorenz - Lorenz Gygax Federal Food Safety and Veterinary Office FFSVO Centre for Proper Housing of Ruminants and Pigs T?nikon, CH-8356 Ettenhausen, Switzerland
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