Sent from my phone. Please excuse my brevity.
On May 10, 2017 11:09:56 AM PDT, Jochen Wirsing <jw1085 at wildcats.unh.edu> wrote:
>Dear all,
>
>thank you very much for you good and helpful input. I would like to
>provide a subset of my data, to show the problem, but don't know
>whether
>I could (or should) just send it as an attachment.
>
>The code I'm using is:
>
>### Unconditional Model
>library(nlme)
>library(broom)
>
>uncmod <- lme(fixed = year_c~1, random = ~1|Place, data = data2, method
>="ML")
>tidy(uncmod)
>summary(uncmod)
>varCorr(uncmod)
>
>
>And the Error I'm getting is
>Error in pdFactor.pdLogChol(X[[i]], ...) : object 'logChol_pd' not
>found
>
>I'd really appreciate if this issue could be fixed, so that I can keep
>on using R productively in my studies.
>
>Best,
>Jochen Wirsing
>
>
>
>______________
>> R.version
> _
>platform x86_64-pc-linux-gnu
>arch x86_64
>os linux-gnu
>system x86_64, linux-gnu
>status
>major 3
>minor 4.0
>year 2017
>month 04
>day 21
>svn rev 72570
>language R
>version.string R version 3.4.0 (2017-04-21)
>nickname You Stupid Darkness
>
>__________________
>
>R version 3.4.0 (2017-04-21)
>Platform: x86_64-pc-linux-gnu (64-bit)
>Running under: Ubuntu 16.04.2 LTS
>
>Matrix products: default
>BLAS: /usr/lib/openblas-base/libblas.so.3
>LAPACK: /usr/lib/libopenblasp-r0.2.18.so
>
>locale:
> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
>[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
>attached base packages:
>[1] stats graphics grDevices utils datasets methods
>[7] base
>
>other attached packages:
> [1] broom_0.4.2 nlme_3.1-131 sjPlot_2.3.1
> [4] sjmisc_2.4.0 dplyr_0.5.0 purrr_0.2.2
> [7] readr_1.1.0 tidyr_0.6.2 tibble_1.3.0
>[10] ggplot2_2.2.1 tidyverse_1.1.1 MASS_7.3-47
>
>loaded via a namespace (and not attached):
> [1] Rcpp_0.12.10 stringdist_0.9.4.4 lubridate_1.6.0
> [4] mvtnorm_1.0-6 lattice_0.20-35 zoo_1.8-0
> [7] lmtest_0.9-35 assertthat_0.2.0 digest_0.6.12
>[10] psych_1.7.5 mime_0.5 R6_2.2.1
>[13] cellranger_1.1.0 plyr_1.8.4 stats4_3.4.0
>[16] coda_0.19-1 httr_1.2.1 multcomp_1.4-6
>[19] lazyeval_0.2.0 readxl_1.0.0 minqa_1.2.4
>[22] nloptr_1.0.4 Matrix_1.2-7.1 DT_0.2
>[25] splines_3.4.0 lme4_1.1-13 stringr_1.2.0
>[28] foreign_0.8-68 htmlwidgets_0.8 munsell_0.4.3
>[31] shiny_1.0.3 compiler_3.4.0 httpuv_1.3.3
>[34] modelr_0.1.0 mnormt_1.5-5 htmltools_0.3.6
>[37] nnet_7.3-12 coin_1.1-3 codetools_0.2-15
>[40] grid_3.4.0 jsonlite_1.4 arm_1.9-3
>[43] xtable_1.8-2 gtable_0.2.0 DBI_0.6-1
>[46] magrittr_1.5 scales_0.4.1 stringi_1.1.5
>[49] reshape2_1.4.2 xml2_1.1.1 effects_3.1-2
>[52] sandwich_2.3-4 TH.data_1.0-8 blme_1.0-4
>[55] tools_3.4.0 forcats_0.2.0 sjstats_0.10.0
>[58] hms_0.3 survival_2.41-3 abind_1.4-5
>[61] parallel_3.4.0 colorspace_1.3-2 rvest_0.3.2
>[64] knitr_1.15.1 haven_1.0.0 modeltools_0.2-21
>[67] merTools_0.3.0
>
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