Message-ID: <CAJMQhGtgOqKBhJkHtrQjE8k4DRO8F_9JPEqEuCwo085yDoaHtw@mail.gmail.com>
Date: 2020-10-15T02:16:24Z
From: Bingsong Zhang
Subject: glmmTMB installation
*Hi all,*
*Can anyone help to check what might be the problem of installation? I
tried to install from CRAN and github, but both failed. Below is the
message I got:*
/usr/local/apps/R/4.0/site-library_4.0.0/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:
required from ?Derived& Eigen::MatrixBase<Derived>::operator=(const
Eigen::DenseBase<OtherDerived>&) [with OtherDerived =
Eigen::Product<Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0,
Eigen::Stride<0, 0> >, Eigen::Map<const Eigen::Matrix<double, -1, -1>, 0,
Eigen::Stride<0, 0> >, 0>; Derived = Eigen::Map<Eigen::Matrix<double, -1,
-1>, 0, Eigen::Stride<0, 0> >]?
/spin1/home/linux/fanr/R/4.0/library/TMB/include/atomic_math.hpp:426:1:
required from ?void atomic::matmul(const CppAD::vector<Type>&,
CppAD::vector<Type>&) [with Double = double]?
/spin1/home/linux/fanr/R/4.0/library/TMB/include/atomic_math.hpp:426:1:
required from ?bool atomic::atomicmatmul<Type>::forward(size_t, size_t,
const CppAD::vector<bool>&, CppAD::vector<bool>&, const
CppAD::vector<Type>&, CppAD::vector<Type>&) [with Type = double; size_t =
long unsigned int]?
/spin1/home/linux/fanr/R/4.0/library/TMB/include/atomic_math.hpp:426:1:
required from here
/usr/local/apps/R/4.0/site-library_4.0.0/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:
warning: ignoring attributes on template argument
?Eigen::internal::packet_traits<double>::type? {aka ?__vector(2) double?}
[-Wignored-attributes]
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make: *** [glmmTMB.o] Error 1
ERROR: compilation failed for package ?glmmTMB?
* removing ?/spin1/home/linux/fanr/R/4.0/library/glmmTMB?
The downloaded source packages are in
?/tmp/RtmpofDpAq/downloaded_packages?
Warning message:
In install.packages("glmmTMB") :
installation of package ?glmmTMB? had non-zero exit status
*There are many more actually, but these were the last part of the error
message.*
*Many thanks,*
*Bingsong*
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