gamm4 "no terms component nor attribute"
This is a problem with either your system, possibly in the way things are installed or possibly something to do with gamm4. Your problems may relate to having an 18 month old version of R and mvcv, and the current version of gamm4. Standard practice is to update to the current versions and then contact the package author.
On 6 May 2015 at 08:18, Steve Bellan <steve.bellan at gmail.com> wrote:
Hi all, I can't even get gamm4 to run it's own example due to this error: Error in terms.default(object, data = data) : no terms component nor attribute , let alone to work on my own data. Haven't been able to find much online. Help much appreciated! Session info & details below. Thanks, Steve Steven Bellan, PhD, MPH Post-doctoral Researcher Lauren Ancel Meyers Research Group Center for Computational Biology and Bioinformatics University of Texas at Austin steve.bellan at gmail.com http://www.bio.utexas.edu/research/meyers/steve_bellan/
sessionInfo()
sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base
library(gamm4)
library(gamm4)
Loading required package: Matrix
Loading required package: lme4
Loading required package: Rcpp
Loading required package: mgcv
Loading required package: nlme
Attaching package: ?nlme?
The following object is masked from ?package:lme4?:
lmList
This is mgcv 1.7-26. For overview type 'help("mgcv-package")'.
This is gamm4 0.2-3
example(gamm4)
example(gamm4) gamm4> ## NOTE: most examples are flagged as 'do not run' simply to gamm4> ## save time in package checking on CRAN. gamm4> gamm4> ################################### gamm4> ## A simple additive mixed model... gamm4> ################################### gamm4> library(gamm4) gamm4> set.seed(0) gamm4> dat <- gamSim(1,n=400,scale=2) ## simulate 4 term additive truth Gu & Wahba 4 term additive model gamm4> ## Now add 20 level random effect `fac'... gamm4> dat$fac <- fac <- as.factor(sample(1:20,400,replace=TRUE)) gamm4> dat$y <- dat$y + model.matrix(~fac-1)%*%rnorm(20)*.5 gamm4> br <- gamm4(y~s(x0)+x1+s(x2),data=dat,random=~(1|fac)) Error in terms.default(object, data = data) : no terms component nor attribute
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