Skip to content
Prev 18105 / 20628 Next

testing OpenMP-enabled glmmTMB on various configurations

Hi. This is what I got:
Downloading GitHub repo glmmTMB/glmmTMB at conditional_openmp
These packages have more recent versions available.
Which would you like to update?

1: All                                      
2: CRAN packages only                       
3: None                                     
4: RcppEigen (0.3.3.5.0 -> 0.3.3.7.0) [CRAN]
5: Rcpp      (1.0.1     -> 1.0.3    ) [CRAN]

Enter one or more numbers, or an empty line to skip updates:
1
RcppEigen (0.3.3.5.0 -> 0.3.3.7.0) [CRAN]
Rcpp      (1.0.1     -> 1.0.3    ) [CRAN]
Installing 2 packages: RcppEigen, Rcpp
probando la URL 'https://cran.itam.mx/bin/macosx/el-capitan/contrib/3.6/RcppEigen_0.3.3.7.0.tgz <https://cran.itam.mx/bin/macosx/el-capitan/contrib/3.6/RcppEigen_0.3.3.7.0.tgz>'
Content type 'application/x-gzip' length 4842361 bytes (4.6 MB)
==================================================
downloaded 4.6 MB

probando la URL 'https://cran.itam.mx/bin/macosx/el-capitan/contrib/3.6/Rcpp_1.0.3.tgz <https://cran.itam.mx/bin/macosx/el-capitan/contrib/3.6/Rcpp_1.0.3.tgz>'
Content type 'application/x-gzip' length 3099696 bytes (3.0 MB)
==================================================
downloaded 3.0 MB


The downloaded binary packages are in
	/var/folders/bt/kwm2wvnn0m37kj9j7b4dxdch0000gn/T//RtmpYU7u2V/downloaded_packages
   checking for file ?/private/var/folders/bt/kwm2wvnn0m37kj9j7b4dxdch0000gn/T/R?  checking for file ?/private/var/folders/bt/kwm2wvnn0m37kj9j7b4dxdch0000gn/T/RtmpYU7u2V/remotes486647c4e2db/glmmTMB-glmmTMB-42b0d9c/glmmTMB/DESCRIPTION? (404ms)
?  preparing ?glmmTMB?:
?  checking DESCRIPTION meta-information ...
?  cleaning src
?  checking for LF line-endings in source and make files and shell scripts
?  checking for empty or unneeded directories
   Removed empty directory ?glmmTMB/inst/misc?
?  looking to see if a ?data/datalist? file should be added
?  building ?glmmTMB_1.0.0.tar.gz?
   
* installing *source* package ?glmmTMB? ...
** using staged installation
** libs
clang++ -arch x86_64 -ftemplate-depth-256 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/TMB/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppEigen/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC  -O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function  -Wno-macro-redefined -Wno-unknown-pragmas -c glmmTMB.cpp -o glmmTMB.o
clang: error: unsupported option '-fopenmp'
make: *** [glmmTMB.o] Error 1
ERROR: compilation failed for package ?glmmTMB?
* removing ?/Library/Frameworks/R.framework/Versions/3.6/Resources/library/glmmTMB?
* restoring previous ?/Library/Frameworks/R.framework/Versions/3.6/Resources/library/glmmTMB?
Error: Failed to install 'glmmTMB' from GitHub:
  (convertido del aviso) installation of package ?/var/folders/bt/kwm2wvnn0m37kj9j7b4dxdch0000gn/T//RtmpYU7u2V/file48666cf3703/glmmTMB_1.0.0.tar.gz? had non-zero exit status

Hope it helps...