Singular estimated var-cov
On Thu, Oct 9, 2008 at 7:27 AM, <francois.mercier at novartis.com> wrote:
Dear list members,
I try to fit a model (using lmer) to data recorded at 4 time points
(days). Each such time series corresponds to a distinct subject. There are
two treatment groups. There is also a patient-level covariate ("o" or
"b"). I am attaching the data frame (as a binary R object) and the R
script that loads the data frame and fits the models.
I regret it has taken so long for you to get a response to your question but I don't think that we can try the fit because you didn't attach the data frame or the script - or at least they didn't make it through the mail list software if you did include them.
The questions are 1) whether the drug effect is influenced by the covariate, and 2) whether there is a temporal trend in drug effect over days.
The problem is that according LMER the covariance matrix for this problem is singular, and as a result the fitted models do not capture the variability of slopes that is seen in the data. Apparently there is a strong correlation between some parameters that leads to this singularity ? Perhaps I misspecified the model for LMER (and LME) ?
It is possible for the estimated covariance matrix to be singular even when there is significant variability in both the slope and the intercept. An example of that is enclosed. We can think of fitting mixed models as a smoothing problem where we need to balance fidelity to the data against the complexity of the model. The model complexity happens to be measured by a determinant and a model with a singular covariance for the random effects has a small value of this determinant. If there is not a correspondingly large loss of fidelity to the data caused by the singular covariance matrix then the estimates will be singular.