Does corSymm() require balanced data?
Dear Joe, You have too few subjects with 4 observations. Either drop those fourth observations. Or use a different correlation structure. E.g. an AR1 fit <- lme( opp ~ time * ccog, random = ~1 | id, correlation = corSymm(), data = dat, subset = time < 3 ) fit_alt <- lme( opp ~ time * ccog, random = ~1 | id, correlation = corAR1(form = ~ time), data = dat ) Best regards, ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government of Flanders INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND FOREST Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance thierry.onkelinx at inbo.be Havenlaan 88 bus 73, 1000 Brussel www.inbo.be /////////////////////////////////////////////////////////////////////////////////////////// To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey /////////////////////////////////////////////////////////////////////////////////////////// <https://www.inbo.be> Op ma 15 mrt. 2021 om 03:27 schreef Tip But <fswfswt at gmail.com>:
Dear Members,
In my longitudinal data below, the first couple of subjects were measured 4
times but the rest of the subjects were measured 3 times (see data below).
We intend to use an unstructured residual correlation matrix in
`nlme::lme()`. But our model fails to converge.
Question: Given our data is unbalanced with respect to our grouping
variable (i.e., `id`), can we use ` corSymm()`? And if we do, what would be
the dimensions of the resultant unstructured residual correlation matrix
for our data; a 3x3 or a 4x4 matrix?
Thank you for your expertise,
Joe
# Data and R Code
dat <- read.csv("https://raw.githubusercontent.com/hkil/m/master/un.csv")
library(nlme)
fit <- lme(opp~time*ccog, random = ~1|id, correlation=corSymm(form = ~ 1 |
id),
data=dat)
Error:
nlminb problem, convergence error code = 1
message = false convergence (8)
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