blmer(), minimum amount of prior to get a model to converge
Thanks Vincent.
FWIW it would make me really happy if people distinguished clearly
between
* "singular/nonsingular" - an issue with the 'true' best estimate, i.e.
whether the MLE for the variance-covariance matrix of the REs is
positive definite vs. being only positive *semi*definite
* "converged/nonconverged" - a question of whether we think the
numerical optimization has worked correctly or not
cheers
Ben Bolker
On 10/3/20 9:22 PM, Vincent Dorie wrote:
There's no single minimum amount, but you can decrease the relative impact of the prior by fitting a sequence of models until convergence becomes a problem again. # default m2 <- blmer(math ~ ses*sector + (ses | sch.id), data = hsb, cov.prior = wishart(df = level.dim + 2.5)) # point at which blme model is same as lme4 m3 <- blmer(math ~ ses*sector + (ses | sch.id), data = hsb, cov.prior = wishart(df = level.dim + 1)) # fit models in sequence with df from level.dim + 2.5 to level.dim + 1 Technically, any prior which goes to zero when the determinant of the covariance of the random effects go to zero should have the desired effect (df > level.dim + 1), but there may be limitations introduced by the optimizer. Vince On Sat, Oct 3, 2020 at 1:17 AM Simon Harmel <sim.harmel at gmail.com> wrote:
Hello all,
This may be a simple/naive question, but I have a non-converging lmer()
model due to singularity.
I was wondering what is the minimum prior specification in `blmer()` to get
this singular model to converge?
library(lme4)
library(blme)
hsb <- read.csv('
https://raw.githubusercontent.com/rnorouzian/e/master/hsb.csv')m4 <- m1 <-
lmer(math ~ ses*sector + (ses | sch.id), data = hsb)
m2 <- blmer(math ~ ses*sector + (ses | sch.id), data = hsb, cov.prior = ???)
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