Gregory (Greg) L. Snow Ph.D.
Statistical Data Center
Intermountain Healthcare
greg.snow at imail.org
(801) 408-8111
> -----Original Message-----
> From: r-sig-mixed-models-bounces at r-project.org
> [mailto:r-sig-mixed-models-bounces at r-project.org] On Behalf
> Of Douglas Bates
> Sent: Thursday, April 24, 2008 7:18 AM
> To: R Mixed Models
> Subject: [R-sig-ME] Version of lme4 on R-forge
>
> There has been some discussion on this list about what is the
> "most recent" version of the lme4 package. The version on
> CRAN is comparatively old. Several months ago I made some
> radical changes in the internal representation of the model
> and I am still working on providing all the earlier
> capabilities under this new representation.
> This is the version on R-forge. It is much more advanced
> than the version on CRAN in the design and even in the theory
> but there are still areas where its functionality is
> incomplete. In particular, the mcmcsamp function in the
> R-forge version doesn't work well for models where some of
> the variance components are near zero. I think I have a way
> out of that but it will involve more development and coding
> and testing.
>
> If I release the R-forge version to CRAN some of the code
> that is documented in books like Harald Baayen's "Analyzing
> Linguistic Data"
> and Gelman and Hill's "Data Analysis Using Regression and
> Multilevel/Hierarchical Models" will cease to function or,
> worse, produce incorrect results.
>
> In general I think that users are better off with the version
> on R-forge except for the long-standing problem of how to
> come up with p-values on fixed-effects terms. This is why I
> get frustrated with this issue of p-values and degrees of
> freedom. There are many good things that could be done with
> the version of lme4 on R-forge. In particular, the ability
> to fit models to large data sets with crossed or partially
> crossed factors for random effects is revolutionary.
> Other software can't do that. But that doesn't matter. The
> only important issue is being able to produce the "correct"
> degrees of freedom on some tinker-toy text book example.
>
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