Specifying and fitting LME model with unstructured error correlation within subject
Thierry, I believe this will induce a compound symmetric covariance structure rather than an unstructured covariance structure. I would like to allow for unique correlations between different subtests. Thanks, Clark On Sun, Dec 2, 2018 at 11:58 AM Thierry Onkelinx via R-sig-mixed-models <
r-sig-mixed-models at r-project.org> wrote:
Dear Kogan, Add (1|id) as random effect. This will induce a correlation among the observations from the same individual. Best regards, ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government of Flanders INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND FOREST Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance thierry.onkelinx at inbo.be Havenlaan 88 bus 73, 1000 Brussel www.inbo.be /////////////////////////////////////////////////////////////////////////////////////////// To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey /////////////////////////////////////////////////////////////////////////////////////////// <https://www.inbo.be> Op vr 30 nov. 2018 om 18:20 schreef Kogan, Clark <clark.kogan at wsu.edu>:
I have some data where a number of individuals have taken a few different subtests and there is 1 response per individual for each subtest. I am fitting the following model using lmer: mod <- lmer(score ~ faculty + gender + subtest + gender:subtest + faculty:gender + faculty:subtest+ (subtest|id), data = score) When fitting this model, I get the error: Error: number of observations (=219) <= number of random effects (=219) for term (subtest | id); the random-effects parameters and the residual variance (or scale parameter) are probably unidentifiable The error makes sense to me - as there is only one data point for every subtest*id, and so we cannot differentiate the random effects from the residuals. What I would like to be able to do is specify that the
residuals
have an unstructured correlation matrix within individuals to account for the fact that an individual will likely have some correlation between
their
subtest scores. Is there a way to do this in lmer or a similar package so that I can
still
get Kenwood Rodgers or Satterthwaite corrected tests of effects (e.g.,
with
pbkrtest or lmerTest).
Thanks,
Clark
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