Message-ID: <4BC48B8C.6040701@utoronto.ca>
Date: 2010-04-13T15:19:40Z
From: Kevin E. Thorpe
Subject: Another case of -1.0 correlation of random effects
In-Reply-To: <4BC47443.1020706@ufl.edu>
Ben Bolker wrote:
> In that case, just go to http://r-forge.r-project.org/scm/?group_id=60
> and follow the instructions:
>
> svn checkout svn://svn.r-forge.r-project.org/svnroot/lme4
>
> then navigate to the lme4a directory and build/install it ...
It's not my day. I go to the directory where the lme4a tree is located
and type "R CMD build lme4a" and get an error when the process gets to:
g++ -I/usr/local/lib/R/include -I/usr/local/include
-I"/usr/local/lib/R/library/Matrix/include"
-I"/usr/local/lib/R/library/Rcpp/include" -fpic -g -O2 -c
glmFamily.cpp -o glmFamily.o
In file included from glmFamily.cpp:1:
glmFamily.h:5:18: error: Rcpp.h: No such file or directory
In file included from glmFamily.cpp:1:
[errors continue]
I looked at lme4a/src/glmFamily.h and find
#include <Rcpp.h>
#include <Rmath.h>
Now, I have both of these files in my installation, but not in the
locations referenced with the -I switches. My Rcpp.h is found in
/usr/local/lib/R/library/Rcpp/lib (not include) and my Rmath.h is
found in /usr/local/lib/R/include which doesn't even show up in an -I
switch.
So, I don't know how these -I switches get generated, but there is a
problem somewhere, either with my installation or something else.
My installation was a standard build (configure; make; make install).
Yes, I fully understand what "unstable" means. Hopefully these errors
are helpful.
Kevin
--
Kevin E. Thorpe
Biostatistician/Trialist, Knowledge Translation Program
Assistant Professor, Dalla Lana School of Public Health
University of Toronto
email: kevin.thorpe at utoronto.ca Tel: 416.864.5776 Fax: 416.864.3016