Hi Patrick,
can you send us your sessionInfo()? Knowing the R version is important, but a few other details matter for debugging this type of problem!
Best,
Phillip
On 25 Jul 2016, at 19:55, Patrick Johann Schratz <patrick.schratz at gmail.com> wrote:
Link to data: <https://www.dropbox.com/s/yi3vf0bmqvydr8h/data.Rd?dl=0>
(1170 obs, 9 variables, .Rd file) [plain link in case sth goes wrong
with the hyperlink: https://www.dropbox.com/s/yi3vf0bmqvydr8h/data.Rd?dl=0]
Simply read it in using `readRDS(file)`.
I?m trying to setup a GLMM using the `glmmPQL` function from the `MASS`
package including a random effects part and accounting for spatial
autocorrelation. However, R (Version: 3.3.1) crashes upon execution.
library(nlme)
# setup model formula
fo <- hail ~ prec_nov_apr + t_min_nov_apr + srad_nov_apr + age
# setup corSpatial object
correl = corSpatial(value = c(10000, 0.1), form = ~ry + rx, nugget
= TRUE,
fixed = FALSE, type = "exponential")
correl = Initialize(correl, data = d)
# fit model
fit5 <- MASS::glmmPQL(fo, random = ~1 | date, data = d,
correlation = correl, family = binomial)
What I tried so far:
- reduce number of observation
- play with `corSpatial` parameters (range and nugget)
- reduce number of fixed predictors
- execute code on Windows, Linux (Debian) and Mac R installations
While I get no error message on my local pc (RStudio just crashes),
running the script on a server returns the following error message:
`R: malloc.c:3540: _int_malloc: Assertion (fwd->size & 0x4) == 0'
failed. Aborted`
Debugging leads me to a "glibc" c++ library problem. I also run valgrind
on it. If you need the output, just ask!
Help ist highly appreciated!
Cheers, Patrick
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