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R2 measure in mixed models?

On Mon, 1 Mar 2010, Juliet Hannah wrote:

            
I have been following this discussion with great interest, and don't pretend
to have any answers.  But, isn't all this only a problem for a MIXED model?
That is, if you made all your variables random effects, then proportion of
variation due to X (in the given population at the given time, yada yada) 
again becomes meaningful?

In the genetics context, where we are usually interested in the random
effects, the "R2" for a given random effect often does strange things
depending on which fixed effects one conditions on.

Another 2c.  David Duffy