glmer Z-test with individual random effects
On 11/11/2010 09:58 AM, Jens ?str?m wrote:
Dear list, As I have read (Bolker et al. 2009 TREE), the Wald Z test is only appropriate for GLMMs in cases without overdispersion. Assuming we use family=poisson with lmer and tackle overdispersion by incorporating an individual random effect AND this adequately "reduces" the overdispersion, is it then OK to use the Wald z test as reported by lmer? In other words, are the p-values reported by lmer in those cases useful/"correct"? Or do they suffer from the usual problems with figuring out the number of parameters used by the random effects?
They are equivalent to assuming an infinite/large 'denominator degrees of freedom'. If you have a large sample size (both a large number of total samples relative to the number of parameters, and a large number of random-effects levels/blocks) then this should be reasonable -- if not, then yes, the 'usual problems with figuring out the number of parameters' is relevant. On the other hand, if you're willing to assume that the sample size is large, then likelihood ratio rests (anova(model1,model2)) are probably better than the Wald tests anyway.
Secondly, is it good practice to judge lmer's capability of "reducing" the overdispersion by summing the squared residuals (pearson) and compare this to a chi square distribution (with N-1 degrees of freedom)?
I would say this is reasonable, although again it's a rough guide because the true degrees of freedom are a bit fuzzy -- it should probably be at most N-(fixed effect degrees of freedom)? Would be happy to hear any conflicting opinions. Ben Bolker