generalized linear mixed models: large differences when using glmmPQL or lmer with laplace approximation
Martijn Vandegehuchte wrote:
First of all, thanks a lot for the info. I know the differences seem small, but most ecological journals still let their opinion about ecological relevance of predictors depend completely on p-values... So I think I'll stick to lmer because of the Laplace approximation.
Well, Laplace should be better anyway. (If the difference were in
the other direction -- non-significant with Laplace and significant with
glmmPQL -- I would still tell you to use Laplace.)
To speak to Greg Snow's comment ("don't worry about p-values, just
look at predictions") -- this is really tough. I still don't know
what to do about the compromise between how statistics should be done
and how journal editors seem to insist it should be done ...
cheers
Ben