Log-normal MCMCglmm
Hi Dani, Can you explain with a formula what you mean by the difference between a model with log-normal errors and a model with normal errors where the response is log-transformed? As the errors are log-normal, i.e. strictly positive, they presumably can?t be additive. Are they multiplicative? If they are then logging the predictor will result in an additive model with normal errors. E.g. a multiplicative model with lognormal errors: Y = Yhat * exp(epsilon), where epsilon ~ exp(N(0, sigma^2)) Log it: log(Y) = log(Yhat) + log(epsilon) which is an additive model with normal errors with the response log-transformed. Best wishes, Paul
On 28 Jul 2015, at 09:47, Daniel Sol <dsolrueda at gmail.com> wrote:
Hi J?rg, Thanks a lot for the suggestion. I actually have tried to use a Poisson error, but it looks like my data best fit a log-normal distribution. Best, Dani 2015-07-28 10:40 GMT+02:00 J?rg Albrecht <albrechj at staff.uni-marburg.de>:
Hi Dani, you could try specifying family = "poisson". Best, J?rg ? J?rg Albrecht, PhD Postdoctoral researcher Institute of Nature Conservation Polish Academy of Sciences Mickiewicza 33 31-120 Krakow, Poland www.carpathianbear.pl www.globeproject.pl www.iop.krakow.pl Am 25.07.2015 um 11:31 schrieb Daniel Sol <dsolrueda at gmail.com>: Hi everybody, I have trouble finding how to implement a MCMCglmm with log-normal error. I know some people just log-transform the response variable, but this is not the same. Many thanks in advance, Dani -- Daniel Sol CREAF (Centre for Ecological Research and Forestry Applications) CSIC (Spanish National Research Council) Bellaterra, Catalonia E-08193, Spain TEL: +34 93-5814678 FAX: +34 93-5814151 E-MAIL: d.sol at creaf.uab.es Webpage: http://dsolrueda.wix.com/sol-group [[alternative HTML version deleted]]
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-- Daniel Sol CREAF (Centre for Ecological Research and Forestry Applications) CSIC (Spanish National Research Council) Bellaterra, Catalonia E-08193, Spain TEL: +34 93-5814678 FAX: +34 93-5814151 E-MAIL: d.sol at creaf.uab.es Webpage: http://dsolrueda.wix.com/sol-group [[alternative HTML version deleted]]
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