On Apr 25, 2018, at 2:45 AM, Emmanuel Curis <emmanuel.curis at parisdescartes.fr> wrote:
Hello,
I think if your interest is more in predictive power of your model
than in its ability to reproduce the dataset, your best choice would
be using cross-validation. And to summarize the closeness of your
predicted results to the real ones, you may use all the concordance
tools, either descriptive like Bland-Altman plots, or more
quantititive like concordance correlation coefficients (but beware
that their interpretation beyond ? the closest to one, the better ? is
not easy) or similar agreement measures. Obviously, the second part
can be done without the cross-validation step, on your single, whole
dataset.
The ? best ? model will be the one witht the highest concordance
correlation coefficient; to test that it is significantly better is
more tricky, but should be done with carefully crafted simulations,
fitting one model to simulated data generated by either one model or
the other and vice-versa...
Note also that if all your predictors are continuous, as seems to be
in your description, the syntax (x+y+...)^n is misleading, because it
forgets some important terms.
Indeed, let consider the two-variables case, x and y. The first order
model is z = ?0 + alpha * x + beta * y, a plane. The second order
model would then be a paraboloid,
z = ?0 + alpha * x + beta * y + gamma * x? + delta * y? + a * x * y
However, the syntax (x+y)^2 expends to x + y + x:y, that is it forgets
the I(x^2) and I(y^2) terms. So, unless you have strong belief that
both gamma and delta are 0, you're model is incomplete.
Hope all of this will help,
Best regards,
Emmanuel
On Tue, Apr 24, 2018 at 09:17:32PM -0400, P Greenwood wrote:
? Hello
?
? Although alpha-band EEG is something of a gold standard in predicting processing of stimuli (pre-stimulus alpha), it is not easy to measure EEG outside the lab (e.g. in a vehicle). In contrast, heart-rate and eye gaze are more reliably obtained in the field using low-cost wearable sensors.
?
? We sought to compare the ability of 3 sensors to model human reaction time (RT) to a signal from automation. We compared these measures: alpha-band (PzAlpha), heart-rate variability (HRV), and eye gaze (lnX). Each person has 10 trials in each of 5 drives. Pnum is subject number.
?
? We sought to model RT from alpha-band, heart-rate variability (HRV), and eye gaze (lnX) and Drive.
?
? sumModelInteraction4 <- lmer(RT ~ 1 + (PzAlpha+ HRV+lnX+Drive)^3 + (1 | Pnum) + (1 | Trial), data = INFAST_Behavioralnew, REML = FALSE)
?
? The output, pasted below, reveals interactions: PzAlpha x HRV, PzAlpha x Drive, and HRV x Drive. Also pasted below is some of the raw data.
?
? An LRT comparing this model with an additive model (PzAlpha+RMSSD+lnX+Drive+Trial) yields a significant difference. This suggests that the interactions PzAlpha x Drive and HRV x Drive are meaningful predictors.
?
? We would like to determine whether PzAlpha x Drive or HRV x Drive is the better predictor of RT. What is the best way to compare those 2 models? The measures are scaled and centered.
?
? Thank you very much.
?
? Pam Greenwood
?
? Fixed effects:
? Estimate Std. Error df t value Pr(>|t|)
? (Intercept) -1.908e-01 1.368e-01 3.310e+01 -1.395 0.17235
? PzAlpha -1.098e-01 6.042e-02 2.339e+02 -1.818 0.07041 .
? HRV -1.127e-01 6.402e-02 1.112e+03 -1.760 0.07868 .
? lnX 7.921e-02 7.547e-02 1.102e+03 1.050 0.29416
? Drive 5.382e-02 1.661e-02 1.080e+03 3.241 0.00123 **
? PzAlpha: HRV -1.586e-01 6.424e-02 7.035e+02 -2.468 0.01382 *
? PzAlpha:lnX 1.116e-01 7.400e-02 8.456e+02 1.508 0.13199
? PzAlpha:Drive 4.405e-02 1.730e-02 1.049e+03 2.546 0.01103 *
? HRV:lnX -4.723e-02 6.905e-02 1.100e+03 -0.684 0.49407
? HRV:Drive 3.652e-02 1.747e-02 1.098e+03 2.091 0.03677 *
? lnX:Drive -1.275e-02 1.992e-02 1.100e+03 -0.640 0.52217
? PzAlpha: HRV:lnX 1.473e-02 2.567e-02 8.244e+02 0.574 0.56621
? PzAlpha: HRV:Drive 3.308e-02 1.878e-02 1.084e+03 1.761 0.07845 .
? PzAlpha:lnX:Drive -2.325e-02 2.005e-02 9.166e+02 -1.160 0.24640
? HRV:lnX:Drive 9.729e-03 1.769e-02 1.097e+03 0.550 0.58247
?
?
?
? Pnum
? Drive Trial RT ACC FzAlpha CzAlpha PzAlpha FzTheta CzTheta PzTheta MeanPupil lnX lnY MeanRR
? HRV
? 20 1 1 1480.8931 1 7.9928 10.216 7.6254 3.4916 4.8657 6.4977 4.280969072 -3.208115816 -2.423813328 0.7336 0.074666667
? 20 1 2 1983.254 1 -8.2609 0.62018 0.32812 4.2257 6.0181 6.5564 4.360414101 -1.926558582 -2.364252526 0.7336 0.074666667
? 20 1 3 1588.0317 1 1.2572 5.5394 9.0619 4.322 6.7421 7.2778 4.429370379 -2.510514134 -2.890876402 0.734 0.073333333
? 20 1 4 2600 0 -2.0822 -3.5216 2.597 7.6632 9.4505 9.2404 3.994177574 -2.121340179 -3.875411777 0.7408 0.050666667
? 20 1 5 1268.9969 1 2.463 4.5837 4.0916 3.4363 4.2989 -2.1573 3.927884406 -1.754642861 -2.737213207 0.7516 0.014666667
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--
Emmanuel CURIS
emmanuel.curis at parisdescartes.fr
Page WWW: http://emmanuel.curis.online.fr/index.html