Convergence issues with nlme:lme
You don't have the model object, since R threw an error. If you run model <- lme(y ~ x, random = ~ 1 + x | group, data = data, control = lmeControl(returnObject = TRUE)) you will get an object returned. However, I don't see anything in the returned object that stores warning information. In these cases you need to set up some machinery to capture and store errors and warnings, et.c. from https://github.com/lme4/lme4/blob/master/R/error_factory.R mylme <- lme4:::factory(lme) model2 <- mylme(y ~ x, random = ~ 1 + x | group, data = data, control = lmeControl(returnObject = TRUE)) attr(model2, "factory-warning") ## [1] "nlminb problem, convergence error code = 1\n message = iteration limit reached without convergence (10)" And now without setting returnObject = TRUE ... model3 <- mylme(y ~ x, random = ~ 1 + x | group, data = data) model3 [1] "An error occurred in the factory function" attr(,"factory-error") [1] "nlminb problem, convergence error code = 1\n message = iteration limit reached without convergence (10)"
On 10/21/24 11:40, Robert Long wrote:
Dear list Having tried to fit a mixed effects model with nlme:lme, and found convergence problems, how do we inspect the fitted model object to find out what is the problem? Reproducible example:
set.seed(3) data <- data.frame(y = rnorm(100), x = rnorm(100), group = rep(1:10, each
= 10))
model <- lme(y ~ x, random = ~ 1 + x | group, data = data)
Error in lme.formula(y ~ x, random = ~1 + x | group, data = data) : nlminb problem, convergence error code = 1 message = iteration limit reached without convergence (10) Now that we have the model object, how do we interrogate it to find out what went wrong? I need to do this in code, so I won't have access to the Error message raised when the model was first fitted (unless there is a magical way to get at the error (which I haven't yet found) Thanks ! [[alternative HTML version deleted]]
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