Increasing iteration limit / lmer bug
Furthermore, I think the patch has already been incorporated in the
development (r-forge) version.
Try
install.packages("lme4",repos="http://r-forge.r-project.org")
and see if that makes a difference.
Luca Borger wrote:
Hello, this same issue has been reported quite recently (29 March 2010), Ben Bolker found that there is indeed a bug and provided also a fix for it. Here is the link to the mail archives: https://stat.ethz.ch/pipermail/r-sig-mixed-models/2010q1/003547.html Cheers, Luca ----- Original Message ----- From: "Adam D. I. Kramer" <adik at ilovebacon.org> To: <r-sig-mixed-models at r-project.org> Sent: Wednesday, March 31, 2010 8:14 PM Subject: Re: [R-sig-ME] Increasing iteration limit / lmer bug
With apologies, after a lot of grepping around and reading pages on the internet, yes, as you expected, my model is to blame. That said, I think that it is quite appropriate for commands listed in the ?help page to actually work or do what they say--in the below case, it is clear that maxIter is being ignored. If it is the case that a "valid" or "good" or "non-stupid" model will easily be fit with maxIter=300 and maxFN=900, then there is no reason to allow users to think they have changed this value when they have not. Cordially, Adam On Wed, 31 Mar 2010, Adam D. I. Kramer wrote:
Dear colleagues, I am attempting to fit a model in this manner: l3 <- glmer(mug ~ condition*time + (time|cafe),family=binomial,data=data) ...the model fails to fit, however, noting: In mer_finalize(ans) : iteration limit reached without convergence (9) ...so, of course, I read the man page for glmer and added control=list(maxIter=3000). However, the program ran for the same amount of time (about 10 minutes) and produced the same error (and, incidentally, the same output). So, I believe there to be a bug in glmer such that maxIter is not functioning. I then upped maxFN, too, (also to 3000) in case that was the problem, but found no meaningful difference in the model produced or the time taken to fit the model. Could somebody recommend a workaround? I would like to fit this model. (running R 2.10.1, lme4 v. 0.999375-32) Also, in case it matters, 'time' here is a categorical variable reperesenting several within-subjects timepoints--there are some other (unanswered) posts to this list in which people appear to have fairly complex within-subjects effects. Perhaps the issue is that the defaults which are in place are insufficiently high for moderately complex within-subjects models? Cordially, Adam D. I. Kramer
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Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / people.biology.ufl.edu/bolker GPG key: people.biology.ufl.edu/bolker/benbolker-publickey.asc