The effects of adding by-subject or by-item random intercepts
Dear all, This question is about the effects of adding by-subject or by-item random intercepts to a model. If we are contrasting a single condition between two subject groups, say ReactionTime ~ Sex, is it warranted (or necessary or ill-advised) to include by-subjects random intercepts, since this could (if I'm understanding it correctly) adjust the mean reaction time for each subject (and thus for each condition) towards the grand mean, thus reducing or eliminating the difference in the condition between subjects? And similarly if we are contrasting a single condition between two sets of items, say ReactionTime ~ Frequency? I believe that the addition of the random effect may reduce the effect of the fixed effect, but should not remove it entirely. Is this right? The question would then become: Why would the addition of say by-item random intercepts to a model take away an effect that was present in a model without by-item random intercepts? Thank you again, your help is well appreciated.
Antoine Tremblay Department of Neuroscience Georgetown University Washington DC