Hello, I have built a zero-inflated GLMM (truncated_nbinom2 distribution) with an ar1 covariance structure using GLMMTMB (latest development version as of yesterday) and MRAN 3.5.1 on a server running windows server 2016. The model produces a warning about false convergence and points to the troubleshooting vignette. However, that page does not specifically mention false convergence. Is the advice for handling this warning the same as another section in the vignette? There are no NA's in the parameter estimate, the AIC values are reported, and sdr$pdhess is TRUE. Is this model useable? If not, any advice on determining where the problem exists? (I assume it is overparameterized despite a large dataset) I apologize for not including a reproducible example, I haven't been able to reproduce the false convergence warning with other datasets Michael Whitby michael.whitby at gmail.com
GLMMTMB false convergence
2 messages · Michael Whitby, Ben Bolker
I don't know if I've included this in the troubleshooting vignette yet, but: the "false convergence" message (ultimately from nlminb()) is pretty obscure. https://stackoverflow.com/questions/40039114/r-nlminb-what-does-false-convergence-actually-mean I can think of the following strategies: * restart the fit from the optimized parameters (the false convergence may not occur because nlminb can reset its iterative procedure) and see if you get the same fit without the warning * scale and center predictors (always worth a try) * as of a *very* recent version of the glmmTMB master branch, you can specify a different optimizer (see ?glmmTMBControl) and see if you get the same answer.
On Wed, May 29, 2019 at 3:02 PM Michael Whitby <michael.whitby at gmail.com> wrote:
Hello,
I have built a zero-inflated GLMM (truncated_nbinom2 distribution) with an
ar1 covariance structure using GLMMTMB (latest development version as of
yesterday) and MRAN 3.5.1 on a server running windows server 2016.
The model produces a warning about false convergence and points to the
troubleshooting vignette.
However, that page does not specifically mention false convergence. Is the
advice for handling this warning the same as another section in the
vignette?
There are no NA's in the parameter estimate, the AIC values are reported,
and sdr$pdhess is TRUE.
Is this model useable? If not, any advice on determining where the problem
exists? (I assume it is overparameterized despite a large dataset)
I apologize for not including a reproducible example, I haven't been able
to reproduce the false convergence warning with other datasets
Michael Whitby
michael.whitby at gmail.com
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