Some Basic lmer Questions

I am taking my first cautious steps into the mixed-models pool and I
have a few, probably basic questions.

The data I am faced with are lab values taken at regular time intervals
(0, 4, 8, 12 and 24 hours) following a surgery.

str(trop)

'data.frame':	790 obs. of  6 variables:
 $ pid  : int  0 0 0 0 0 1 1 1 1 1 ...
 $ ittrx: int  1 1 1 1 1 2 2 2 2 2 ...
 $ pprx : int  1 1 1 1 1 2 2 2 2 2 ...
 $ rx3  : Factor w/ 3 levels "On","Off","Converted": 1 1 1 1 1 2 2 2 2 2 ...
 $ hours: num  0 4 8 12 24 0 4 8 12 24 ...
 $ trop : num  2.12 9.51 5.79 4.37 1.8 NA NA NA NA NA ...
 - attr(*, "reshapeLong")=List of 4
  ..$ varying:List of 1
  .. ..$ : chr  "Trop0" "Trop4" "Trop8" "Trop12" ...
  ..$ v.names: chr "trop"
  ..$ idvar  : chr "pid"
  ..$ timevar: chr "hours"


Of interest is whether or not there are differences among the groups
represented by rx3 above.  If we pretend for the moment that the time
effect is linear and there is no treatment by time interaction, I
would be inclined to test for differences as follows (also
ignoring any correlation structure).

trop.lme0 <- lmer(trop~hours+(1|pid),data=trop,method="ML")
trop.lme1 <- lmer(trop~rx3+hours+(1|pid),data=trop,method="ML")
anova(trop.lme0,trop.lme1)

I seem to recall hearing/reading that the LRT from anova() is
appropriate for maximum-likelihood but not REML which is why
I used method="ML".  So, is this the right approach or have
I seriously misunderstood something?

Next, assuming I have not done anything egregious, I want to
turn to the non-linearity of the time effect.  I found that
I can use ns() in the splines package to include a spline term
for hours, but is this the right approach?  I could also see
making hours a factor to allow for non-linearity as well.

Finally, (and feel free to point me at suitable references)
how does one determine the appropriate correlation structure
to use in these models?

On Mon, Jan 14, 2008 at 03:21:20PM -0500, Kevin E. Thorpe wrote:

Finally, (and feel free to point me at suitable references)
how does one determine the appropriate correlation structure
to use in these models?

See above!

Andrew

Hi Kevin,

welcome to the wonderful world of mixed-models!  I heartily recommend
that you read the following books: Gelman and Hill, and Pinehiro and
Bates.

On Mon, Jan 14, 2008 at 03:21:20PM -0500, Kevin E. Thorpe wrote:

Finally, (and feel free to point me at suitable references)
how does one determine the appropriate correlation structure
to use in these models?