Hi I am trying to install RLRsim. I get an error message (below) saying that access is denied to one of the files Error: Access is denied. Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll Leow this message is the log when I try to use Winzip to unpack it. I get the same message as above when installing it through the R-GUI. Thanks in advance for advice. Margaret Extracting to "C:\Program Files\R\R-2.8.1\library\RLRsim\" Use Path: yes Overlay Files: no creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\ creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\chtml\ Extracting RLRsim.chm Extracting CONTENTS Extracting DESCRIPTION creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\help\ Extracting AnIndex Extracting exactLRT Extracting exactRLRT Extracting extract.lmeDesign Extracting LRTSim Extracting RLRsim-package creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\html\ Extracting 00Index.html Extracting exactLRT.html Extracting exactRLRT.html Extracting extract.lmeDesign.html Extracting LRTSim.html Extracting RLRsim-package.html Extracting INDEX creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\latex\ Extracting exactLRT.tex Extracting exactRLRT.tex Extracting extract.lmeDesign.tex Extracting LRTSim.tex Extracting RLRsim-package.tex creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\ Error: Access is denied. Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\man\ Extracting RLRsim.Rd.gz Extracting MD5 creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\Meta\ Extracting hsearch.rds Extracting nsInfo.rds Extracting package.rds Extracting Rd.rds Extracting NAMESPACE creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R\ Extracting RLRsim Extracting RLRsim.rdb Extracting RLRsim.rdx creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R-ex\ Extracting exactLRT.R Extracting exactRLRT.R Extracting extract.lmeDesign.R Extracting LRTSim.R Dr. Margaret Mackinnon KEMRI-Wellcome Collaborative Programme, Coast PO Box 230 Kilifi Kenya mmackinnon at kilifi.kemri-wellcome.org + 254 417 522535 Ext 228 + 254 417 522390 This e-mail (including any attachment to it) contains information which is confidential. It is intended only for the use of the named recipient. If you have received this e-mail in error, please let us know by replying to the sender, and immediately delete it from your system. Please note, that in these circumstances, the use, disclosure, distribution or copying of this information is strictly prohibited. We apologize for any inconvenience that may have been caused to you. KEMRI-Wellcome Trust Programmecannot accept any responsibility for the accuracy or completeness of this message as it has been transmitted over a public network. KEMRI-Wellcome Trust Programme reserves the right to monitor all incoming and outgoing email traffic. Although the Programme has taken reasonable precautions to ensure no viruses are present in emails, it cannot accept responsibility for any loss or damage arising from the use of the email or attachments. Any views expressed in this message are those of the individual sender, except where the sender specifically states them to be the views of KEMRI- Wellcome Trust Programme".
Problem installing RLRsim
4 messages · Margaret Mackinnon, Chuck Cleland, Daniel Ezra Johnson
On 6/12/2009 8:00 AM, Margaret Mackinnon wrote:
Hi I am trying to install RLRsim. I get an error message (below) saying that access is denied to one of the files Error: Access is denied. Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll Leow this message is the log when I try to use Winzip to unpack it. I get the same message as above when installing it through the R-GUI. Thanks in advance for advice.
It works for me using install.packages():
install.packages("RLRsim")
--- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.9/RLRsim_2.0-2.zip' Content type 'application/zip' length 254255 bytes (248 Kb) opened URL downloaded 248 Kb package 'RLRsim' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Documents and Settings\Chuck\Local Settings\Temp\RtmpDyABNe\downloaded_packages updating HTML package descriptions
library(RLRsim)
library(mgcv)
This is mgcv 1.5-5 . For overview type `help("mgcv-package")'.
data(trees)
m.q<-gamm(I(log(Volume)) ~ Height + s(Girth, m = 3), data = trees,
method = "REML")$lme Loading required package: nlme
exactRLRT(m.q)
simulated finite sample distribution of RLRT. (p-value based on 10000 simulated values) data: RLRT = 0, p-value = 1
sessionInfo()
R version 2.9.0 Patched (2009-05-23 r48600) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] nlme_3.1-92 mgcv_1.5-5 RLRsim_2.0-2 loaded via a namespace (and not attached): [1] grid_2.9.0 lattice_0.17-25 tools_2.9.0
Margaret Extracting to "C:\Program Files\R\R-2.8.1\library\RLRsim\" Use Path: yes Overlay Files: no creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\ creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\chtml\ Extracting RLRsim.chm Extracting CONTENTS Extracting DESCRIPTION creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\help\ Extracting AnIndex Extracting exactLRT Extracting exactRLRT Extracting extract.lmeDesign Extracting LRTSim Extracting RLRsim-package creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\html\ Extracting 00Index.html Extracting exactLRT.html Extracting exactRLRT.html Extracting extract.lmeDesign.html Extracting LRTSim.html Extracting RLRsim-package.html Extracting INDEX creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\latex\ Extracting exactLRT.tex Extracting exactRLRT.tex Extracting extract.lmeDesign.tex Extracting LRTSim.tex Extracting RLRsim-package.tex creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\ Error: Access is denied. Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\man\ Extracting RLRsim.Rd.gz Extracting MD5 creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\Meta\ Extracting hsearch.rds Extracting nsInfo.rds Extracting package.rds Extracting Rd.rds Extracting NAMESPACE creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R\ Extracting RLRsim Extracting RLRsim.rdb Extracting RLRsim.rdx creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R-ex\ Extracting exactLRT.R Extracting exactRLRT.R Extracting extract.lmeDesign.R Extracting LRTSim.R Dr. Margaret Mackinnon KEMRI-Wellcome Collaborative Programme, Coast PO Box 230 Kilifi Kenya mmackinnon at kilifi.kemri-wellcome.org + 254 417 522535 Ext 228 + 254 417 522390 This e-mail (including any attachment to it) contains information which is confidential. It is intended only for the use of the named recipient. If you have received this e-mail in error, please let us know by replying to the sender, and immediately delete it from your system. Please note, that in these circumstances, the use, disclosure, distribution or copying of this information is strictly prohibited. We apologize for any inconvenience that may have been caused to you. KEMRI-Wellcome Trust Programmecannot accept any responsibility for the accuracy or completeness of this message as it has been transmitted over a public network. KEMRI-Wellcome Trust Programme reserves the right to monitor all incoming and outgoing email traffic. Although the Programme has taken reasonable precautions to ensure no viruses are present in emails, it cannot accept responsibility for any loss or damage arising from the use of the email or attachments. Any views expressed in this message are those of the individual sender, except where the sender specifically states them to be the views of KEMRI- Wellcome Trust Programme".
_______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
Chuck Cleland, Ph.D. NDRI, Inc. (www.ndri.org) 71 West 23rd Street, 8th floor New York, NY 10010 tel: (212) 845-4495 (Tu, Th) tel: (732) 512-0171 (M, W, F) fax: (917) 438-0894
A similar error used to occur for me when trying to install R packages on an office computer to which I was not a "super-user". I think it's having trouble writing to the Library directory. Dan
On Fri, Jun 12, 2009 at 9:16 AM, Chuck Cleland<ccleland at optonline.net> wrote:
On 6/12/2009 8:00 AM, Margaret Mackinnon wrote:
Hi I am trying to install RLRsim. I get an error message (below) saying that access is denied to one of the files Error: Access is denied. Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll Leow this message is the log when I try to use Winzip to unpack it. I get the same message as above when installing it through the R-GUI. Thanks in advance for advice.
It works for me using install.packages():
install.packages("RLRsim")
--- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.9/RLRsim_2.0-2.zip' Content type 'application/zip' length 254255 bytes (248 Kb) opened URL downloaded 248 Kb package 'RLRsim' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Documents and Settings\Chuck\Local Settings\Temp\RtmpDyABNe\downloaded_packages updating HTML package descriptions
library(RLRsim)
library(mgcv)
This is mgcv 1.5-5 . For overview type `help("mgcv-package")'.
data(trees)
m.q<-gamm(I(log(Volume)) ~ Height + s(Girth, m = 3), data = trees,
method = "REML")$lme Loading required package: nlme
exactRLRT(m.q)
simulated finite sample distribution of RLRT. (p-value based on
10000 simulated values)
data:
RLRT = 0, p-value = 1
sessionInfo()
R version 2.9.0 Patched (2009-05-23 r48600) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] nlme_3.1-92 mgcv_1.5-5 RLRsim_2.0-2 loaded via a namespace (and not attached): [1] grid_2.9.0 lattice_0.17-25 tools_2.9.0
Margaret Extracting to "C:\Program Files\R\R-2.8.1\library\RLRsim\" Use Path: yes Overlay Files: no creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\ creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\chtml\ Extracting RLRsim.chm Extracting CONTENTS Extracting DESCRIPTION creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\help\ Extracting AnIndex Extracting exactLRT Extracting exactRLRT Extracting extract.lmeDesign Extracting LRTSim Extracting RLRsim-package creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\html\ Extracting 00Index.html Extracting exactLRT.html Extracting exactRLRT.html Extracting extract.lmeDesign.html Extracting LRTSim.html Extracting RLRsim-package.html Extracting INDEX creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\latex\ Extracting exactLRT.tex Extracting exactRLRT.tex Extracting extract.lmeDesign.tex Extracting LRTSim.tex Extracting RLRsim-package.tex creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\ Error: Access is denied. Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\man\ Extracting RLRsim.Rd.gz Extracting MD5 creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\Meta\ Extracting hsearch.rds Extracting nsInfo.rds Extracting package.rds Extracting Rd.rds Extracting NAMESPACE creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R\ Extracting RLRsim Extracting RLRsim.rdb Extracting RLRsim.rdx creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R-ex\ Extracting exactLRT.R Extracting exactRLRT.R Extracting extract.lmeDesign.R Extracting LRTSim.R Dr. Margaret Mackinnon KEMRI-Wellcome Collaborative Programme, Coast PO Box 230 Kilifi Kenya mmackinnon at kilifi.kemri-wellcome.org + 254 417 522535 Ext 228 + 254 417 522390 This e-mail (including any attachment to it) contains information which is confidential. It is intended only for the use of the named recipient. If you have received this e-mail in error, please let us know by replying to the sender, and immediately delete it from your system. Please note, that in these circumstances, the use, disclosure, distribution or copying of this information is strictly prohibited. We apologize for any inconvenience that may have been caused to you. KEMRI-Wellcome Trust Programmecannot accept any responsibility for the accuracy or completeness of this message as it has been transmitted over a public network. KEMRI-Wellcome Trust Programme reserves the right to monitor all incoming and outgoing email traffic. Although the Programme has taken reasonable precautions to ensure no viruses are present in emails, it cannot accept responsibility for any loss or damage arising from the use of the email or attachments. Any views expressed in this message are those of the individual sender, except where the sender specifically states them to be the views of KEMRI- Wellcome Trust Programme".
_______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
-- Chuck Cleland, Ph.D. NDRI, Inc. (www.ndri.org) 71 West 23rd Street, 8th floor New York, NY 10010 tel: (212) 845-4495 (Tu, Th) tel: (732) 512-0171 (M, W, F) fax: (917) 438-0894
_______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
Thanks. I turned off McAfee virus software and it worked. Mgt Dr. Margaret Mackinnon KEMRI-Wellcome Collaborative Programme, Coast PO Box 230 Kilifi Kenya mmackinnon at kilifi.kemri-wellcome.org + 254 417 522535 Ext 228 + 254 417 522390
Chuck Cleland <ccleland at optonline.net> 12 June 2009 16:16 >>>
On 6/12/2009 8:00 AM, Margaret Mackinnon wrote:
Hi I am trying to install RLRsim. I get an error message (below) saying that access is denied to one of the files Error: Access is denied. Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll Leow this message is the log when I try to use Winzip to unpack it. I get the same message as above when installing it through the R-GUI. Thanks in advance for advice.
It works for me using install.packages():
install.packages("RLRsim")
--- Please select a CRAN mirror for use in this session --- trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.9/RLRsim_2.0-2.zip' Content type 'application/zip' length 254255 bytes (248 Kb) opened URL downloaded 248 Kb package 'RLRsim' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Documents and Settings\Chuck\Local Settings\Temp\RtmpDyABNe\downloaded_packages updating HTML package descriptions
library(RLRsim)
library(mgcv)
This is mgcv 1.5-5 . For overview type `help("mgcv-package")'.
data(trees)
m.q<-gamm(I(log(Volume)) ~ Height + s(Girth, m = 3), data = trees,
method = "REML")$lme Loading required package: nlme
exactRLRT(m.q)
simulated finite sample distribution of RLRT. (p-value based on 10000 simulated values) data: RLRT = 0, p-value = 1
sessionInfo()
R version 2.9.0 Patched (2009-05-23 r48600) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] nlme_3.1-92 mgcv_1.5-5 RLRsim_2.0-2 loaded via a namespace (and not attached): [1] grid_2.9.0 lattice_0.17-25 tools_2.9.0
Margaret Extracting to "C:\Program Files\R\R-2.8.1\library\RLRsim\" Use Path: yes Overlay Files: no creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\ creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\chtml\ Extracting RLRsim.chm Extracting CONTENTS Extracting DESCRIPTION creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\help\ Extracting AnIndex Extracting exactLRT Extracting exactRLRT Extracting extract.lmeDesign Extracting LRTSim Extracting RLRsim-package creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\html\ Extracting 00Index.html Extracting exactLRT.html Extracting exactRLRT.html Extracting extract.lmeDesign.html Extracting LRTSim.html Extracting RLRsim-package.html Extracting INDEX creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\latex\ Extracting exactLRT.tex Extracting exactRLRT.tex Extracting extract.lmeDesign.tex Extracting LRTSim.tex Extracting RLRsim-package.tex creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\ Error: Access is denied. Cannot create C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\libs\RLRsim.dll creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\man\ Extracting RLRsim.Rd.gz Extracting MD5 creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\Meta\ Extracting hsearch.rds Extracting nsInfo.rds Extracting package.rds Extracting Rd.rds Extracting NAMESPACE creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R\ Extracting RLRsim Extracting RLRsim.rdb Extracting RLRsim.rdx creating: C:\Program Files\R\R-2.8.1\library\RLRsim\RLRsim\R-ex\ Extracting exactLRT.R Extracting exactRLRT.R Extracting extract.lmeDesign.R Extracting LRTSim.R Dr. Margaret Mackinnon KEMRI-Wellcome Collaborative Programme, Coast PO Box 230 Kilifi Kenya mmackinnon at kilifi.kemri-wellcome.org + 254 417 522535 Ext 228 + 254 417 522390 This e-mail (including any attachment to it) contains information which is confidential. It is intended only for the use of the named recipient. If you have received this e-mail in error, please let us know by replying to the sender, and immediately delete it from your system. Please note, that in these circumstances, the use, disclosure, distribution or copying of this information is strictly prohibited. We apologize for any inconvenience that may have been caused to you. KEMRI-Wellcome Trust Programmecannot accept any responsibility for the accuracy or completeness of this message as it has been transmitted over a public network. KEMRI-Wellcome Trust Programme reserves the right to monitor all incoming and outgoing email traffic. Although the Programme has taken reasonable precautions to ensure no viruses are present in emails, it cannot accept responsibility for any loss or damage arising from the use of the email or attachments. Any views expressed in this message are those of the individual sender, except where the sender specifically states them to be the views of KEMRI- Wellcome Trust Programme".
_______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
Chuck Cleland, Ph.D. NDRI, Inc. (www.ndri.org) 71 West 23rd Street, 8th floor New York, NY 10010 tel: (212) 845-4495 (Tu, Th) tel: (732) 512-0171 (M, W, F) fax: (917) 438-0894 This e-mail (including any attachment to it) contains information which is confidential. It is intended only for the use of the named recipient. If you have received this e-mail in error, please let us know by replying to the sender, and immediately delete it from your system. Please note, that in these circumstances, the use, disclosure, distribution or copying of this information is strictly prohibited. We apologize for any inconvenience that may have been caused to you. KEMRI-Wellcome Trust Programmecannot accept any responsibility for the accuracy or completeness of this message as it has been transmitted over a public network. KEMRI-Wellcome Trust Programme reserves the right to monitor all incoming and outgoing email traffic. Although the Programme has taken reasonable precautions to ensure no viruses are present in emails, it cannot accept responsibility for any loss or damage arising from the use of the email or attachments. Any views expressed in this message are those of the individual sender, except where the sender specifically states them to be the views of KEMRI- Wellcome Trust Programme".