[Fwd: Re: Matrix broken on Mac...]

[whoops, first sent this from my current email, which the listserv didn't
recognize.  apologies if this comes through twice.]

Doug--

You had inquired whether anyone else was having problems with Matrix on
a Mac... yep.  I am.  You'll see below that I removed both lme4 and
Matrix, re-install from r-forge, but get an error msg.  sessionInfo() at
bottom.

Could someone point me to an earlier version of Matrix?  I don't believe
I had this problem prior to the most recent update.

cheers, Dave

Dave Atkins, PhD
Research Associate Professor
Center for the Study of Health and Risk Behaviors
Department of  Psychiatry and Behavioral Science
1100 NE 45th Street, Suite 300
Seattle, WA  98105
206-616-3879
datkins at u.washington.edu

remove.packages("Matrix")

Warning in remove.packages("Matrix") :
 argument 'lib' is missing: using
/Library/Frameworks/R.framework/Resources/library

remove.packages("lme4")

Warning in remove.packages("lme4") :
 argument 'lib' is missing: using
/Library/Frameworks/R.framework/Resources/library

install.packages("Matrix", repos = "http://r-forge.r-project.org")

trying URL
'http://r-forge.r-project.org/bin/macosx/universal/contrib/2.8/Matrix_0.999375-17.tgz'
Content type 'application/x-gzip' length 2740286 bytes (2.6 Mb)
opened URL
==================================================
downloaded 2.6 Mb


The downloaded packages are in

 /var/folders/eF/eFm91WFiEm8IX1HSzMCn4E+++TI/-Tmp-//RtmpVgGfBC/downloaded_packages

install.packages("lme4", repos = "http://r-forge.r-project.org")

trying URL
'http://r-forge.r-project.org/bin/macosx/universal/contrib/2.8/lme4_0.999375-27.tgz'
Content type 'application/x-gzip' length 913761 bytes (892 Kb)
opened URL
==================================================
downloaded 892 Kb


The downloaded packages are in

 /var/folders/eF/eFm91WFiEm8IX1HSzMCn4E+++TI/-Tmp-//RtmpVgGfBC/downloaded_packages

library(lme4)

Loading required package: Matrix
Error in dyn.load(file, DLLpath = DLLpath, ...) :
 unable to load shared library
'/Library/Frameworks/R.framework/Resources/library/Matrix/libs/i386/Matrix.so':

dlopen(/Library/Frameworks/R.framework/Resources/library/Matrix/libs/i386/Matrix.so,
6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
 Referenced from:
/Library/Frameworks/R.framework/Resources/library/Matrix/libs/i386/Matrix.so
 Reason: image not found
Error: package 'Matrix' could not be loaded

sessionInfo()

R version 2.8.0 (2008-10-20)
i386-apple-darwin8.11.1

locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] lattice_0.17-17

loaded via a namespace (and not attached):
[1] grid_2.8.0  tools_2.8.0

Does

library(Matrix)

without any reference to lme4 work for you?

The other person who was having difficulty loading the Matrix package
on a Mac was able to resolve the problem although I forget the details
of how it was resolved.

The messages indicate that the problem is more with Matrix than with lme4.

On Mon, Dec 1, 2008 at 12:26 PM, Dave Atkins <datkins at fuller.edu> wrote:

[whoops, first sent this from my current email, which the listserv didn't
recognize.  apologies if this comes through twice.]

And it did come through twice.  I read the messages in the wrong order
and authorized the posting from the other address before reading this
message.  Sorry for the extra noise.

Doug--

You had inquired whether anyone else was having problems with Matrix on
a Mac... yep.  I am.  You'll see below that I removed both lme4 and
Matrix, re-install from r-forge, but get an error msg.  sessionInfo() at
bottom.

Could someone point me to an earlier version of Matrix?  I don't believe
I had this problem prior to the most recent update.

cheers, Dave

Dave Atkins, PhD
Research Associate Professor
Center for the Study of Health and Risk Behaviors
Department of  Psychiatry and Behavioral Science
1100 NE 45th Street, Suite 300
Seattle, WA  98105
206-616-3879
datkins at u.washington.edu

remove.packages("Matrix")

Warning in remove.packages("Matrix") :
 argument 'lib' is missing: using
/Library/Frameworks/R.framework/Resources/library

remove.packages("lme4")

Warning in remove.packages("lme4") :
 argument 'lib' is missing: using
/Library/Frameworks/R.framework/Resources/library

install.packages("Matrix", repos = "http://r-forge.r-project.org")

trying URL
'http://r-forge.r-project.org/bin/macosx/universal/contrib/2.8/Matrix_0.999375-17.tgz'
Content type 'application/x-gzip' length 2740286 bytes (2.6 Mb)
opened URL
==================================================
downloaded 2.6 Mb


The downloaded packages are in

 /var/folders/eF/eFm91WFiEm8IX1HSzMCn4E+++TI/-Tmp-//RtmpVgGfBC/downloaded_packages

install.packages("lme4", repos = "http://r-forge.r-project.org")

trying URL
'http://r-forge.r-project.org/bin/macosx/universal/contrib/2.8/lme4_0.999375-27.tgz'
Content type 'application/x-gzip' length 913761 bytes (892 Kb)
opened URL
==================================================
downloaded 892 Kb


The downloaded packages are in

 /var/folders/eF/eFm91WFiEm8IX1HSzMCn4E+++TI/-Tmp-//RtmpVgGfBC/downloaded_packages

library(lme4)

Loading required package: Matrix
Error in dyn.load(file, DLLpath = DLLpath, ...) :
 unable to load shared library
'/Library/Frameworks/R.framework/Resources/library/Matrix/libs/i386/Matrix.so':

dlopen(/Library/Frameworks/R.framework/Resources/library/Matrix/libs/i386/Matrix.so,
6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
 Referenced from:
/Library/Frameworks/R.framework/Resources/library/Matrix/libs/i386/Matrix.so
 Reason: image not found
Error: package 'Matrix' could not be loaded

sessionInfo()

R version 2.8.0 (2008-10-20)
i386-apple-darwin8.11.1

locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] lattice_0.17-17

loaded via a namespace (and not attached):
[1] grid_2.8.0  tools_2.8.0