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an error in gee()
2 messages · Chaehyung Ahn, ONKELINX, Thierry
Dear Cahn, I tend to use the geepack package instead of the gee package. Just change the name of the package and it works like a charm. library(geepack) data(Rail,package="nlme") geese(travel~1, id=Rail, data=Rail, corstr="exchangeable") HTH, Thierry ------------------------------------------------------------------------ ---- ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek team Biometrie & Kwaliteitszorg Gaverstraat 4 9500 Geraardsbergen Belgium Research Institute for Nature and Forest team Biometrics & Quality Assurance Gaverstraat 4 9500 Geraardsbergen Belgium tel. + 32 54/436 185 Thierry.Onkelinx at inbo.be www.inbo.be To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey -----Oorspronkelijk bericht----- Van: r-sig-mixed-models-bounces at r-project.org [mailto:r-sig-mixed-models-bounces at r-project.org] Namens Chaehyung Ahn Verzonden: donderdag 14 januari 2010 4:14 Aan: r-sig-mixed-models at r-project.org Onderwerp: [R-sig-ME] an error in gee() Hi everyone, I've been trying to fit a simple dataset Rail in nlme package with gee(). This is what I tried. Rail has 3 repetitions for each id. ---------------------------------------- library(gee) data(Rail,package="nlme") gee(travel~1, id=Rail, data=Rail, corstr="exchangeable") ---------------------------------------- However, I got the following error; ---------------------------------------- Working Correlation[1:4,1:4] Error in print(x$working.correlation[1:4, 1:4], digits = digits) : subscript out of bounds ---------------------------------------- I make the Rail have 4 repetitions per each id, then it works. ----------------------------------------------- Rail1<-rbind(Rail,c(1,53),c(2,30),c(3,87),c(4,95),c(5,48),c(6,84)) aa<-order(Rail1$Rail) Rail1<-Rail1[aa,] gee(travel~1, id=Rail, data=Rail1, corstr="exchangeable") --------------------------------------------------- So, it works with 4 repetitions but with 3 repetitions. Did I do something wrong or is it a known bug? Many thanks in advance. cahn -- Chaehyung Ahn 4033 Remington Oaks Circle Cary, NC 27519 http://cahn88.blogspot.com/ _______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models Druk dit bericht a.u.b. niet onnodig af. Please do not print this message unnecessarily. Dit bericht en eventuele bijlagen geven enkel de visie van de schrijver weer en binden het INBO onder geen enkel beding, zolang dit bericht niet bevestigd is door een geldig ondertekend document. The views expressed in this message and any annex are purely those of the writer and may not be regarded as stating an official position of INBO, as long as the message is not confirmed by a duly signed document.