Hi, I am trying to figure out what the default number of chains are in MCMCglmm and how to change this. I've checked out the help page with MCMCglmm and don't see any reference to this. I imagine I'm missing something obvious. Thanks, Chris
Default number of chains in MCMCglmm
2 messages · Christopher David Desjardins, Jarrod Hadfield
Hi Chris, Only a single chain. If you want two, you have to run it twice - not very sophisticated, I know. If you want over-dispersed starting values to make sure the chain is converging to the same distribution you can specify starting values in the start argument of MCMCglmm. start=list(QUASI=FALSE) is a quick way of getting sei-overdispersed starting values. If you are referring to the concept of heated chains, then there is only one chain - the "cold" one. Cheers, Jarrod Quoting Christopher David Desjardins <desja004 at umn.edu>:
Hi, I am trying to figure out what the default number of chains are in MCMCglmm and how to change this. I've checked out the help page with MCMCglmm and don't see any reference to this. I imagine I'm missing something obvious. Thanks, Chris
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