Dear All, I tried to use the package manager in the GUI to connect to http://lme4.r-forge.r-project.org/repos, but I get: Warning: unable to access index for repository http://lme4.r-forge.r-project.org/repos/bin/macosx/contrib/3.0 I noticed that there is a binary here: http://lme4.r-forge.r-project.org/repos/bin/macosx/leopard/contrib/3.0/ (i.e. the GUI package manager is not resolving the right address I presume). Hence I have two questions. Does the R-forge lme4 page need a tweak? Is that binary the latest and greatest, safe to use with R 3.0.0 on a 64-bit mac running OS 10.8.3? Best wishes F PS I CC'd Simon and Hans-J?rg in case the problem is not on the r-forge page but on how the GUI resolves the address.
lme4 binary for OSX
4 messages · Federico Calboli, ONKELINX, Thierry, Ben Bolker
Dear Federico, It seems that R-forge isn't yet updated to R 3.0.0. Hence the packages are not available for R 3.0.0 Best regards, Thierry ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium + 32 2 525 02 51 + 32 54 43 61 85 Thierry.Onkelinx at inbo.be www.inbo.be To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey -----Oorspronkelijk bericht----- Van: r-sig-mixed-models-bounces at r-project.org [mailto:r-sig-mixed-models-bounces at r-project.org] Namens Federico Calboli Verzonden: dinsdag 9 april 2013 12:46 Aan: <r-sig-mixed-models at r-project.org> list CC: Simon Urbanek; Hans-J?rg Bibiko Onderwerp: [R-sig-ME] lme4 binary for OSX Dear All, I tried to use the package manager in the GUI to connect to http://lme4.r-forge.r-project.org/repos, but I get: Warning: unable to access index for repository http://lme4.r-forge.r-project.org/repos/bin/macosx/contrib/3.0 I noticed that there is a binary here: http://lme4.r-forge.r-project.org/repos/bin/macosx/leopard/contrib/3.0/ (i.e. the GUI package manager is not resolving the right address I presume). Hence I have two questions. Does the R-forge lme4 page need a tweak? Is that binary the latest and greatest, safe to use with R 3.0.0 on a 64-bit mac running OS 10.8.3? Best wishes F PS I CC'd Simon and Hans-J?rg in case the problem is not on the r-forge page but on how the GUI resolves the address. _______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models * * * * * * * * * * * * * D I S C L A I M E R * * * * * * * * * * * * * Dit bericht en eventuele bijlagen geven enkel de visie van de schrijver weer en binden het INBO onder geen enkel beding, zolang dit bericht niet bevestigd is door een geldig ondertekend document. The views expressed in this message and any annex are purely those of the writer and may not be regarded as stating an official position of INBO, as long as the message is not confirmed by a duly signed document.
Dear Thierry, thank you for letting me know. I though this link http://lme4.r-forge.r-project.org/repos/bin/macosx/leopard/contrib/3.0/ on the lme4 page meant it was, but that's not the case then. BW F
On 9 Apr 2013, at 13:21, "ONKELINX, Thierry" <Thierry.ONKELINX at inbo.be> wrote:
Dear Federico, It seems that R-forge isn't yet updated to R 3.0.0. Hence the packages are not available for R 3.0.0 Best regards, Thierry ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium + 32 2 525 02 51 + 32 54 43 61 85 Thierry.Onkelinx at inbo.be www.inbo.be To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of. ~ Sir Ronald Aylmer Fisher The plural of anecdote is not data. ~ Roger Brinner The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data. ~ John Tukey -----Oorspronkelijk bericht----- Van: r-sig-mixed-models-bounces at r-project.org [mailto:r-sig-mixed-models-bounces at r-project.org] Namens Federico Calboli Verzonden: dinsdag 9 april 2013 12:46 Aan: <r-sig-mixed-models at r-project.org> list CC: Simon Urbanek; Hans-J?rg Bibiko Onderwerp: [R-sig-ME] lme4 binary for OSX Dear All, I tried to use the package manager in the GUI to connect to http://lme4.r-forge.r-project.org/repos, but I get: Warning: unable to access index for repository http://lme4.r-forge.r-project.org/repos/bin/macosx/contrib/3.0 I noticed that there is a binary here: http://lme4.r-forge.r-project.org/repos/bin/macosx/leopard/contrib/3.0/ (i.e. the GUI package manager is not resolving the right address I presume). Hence I have two questions. Does the R-forge lme4 page need a tweak? Is that binary the latest and greatest, safe to use with R 3.0.0 on a 64-bit mac running OS 10.8.3? Best wishes F PS I CC'd Simon and Hans-J?rg in case the problem is not on the r-forge page but on how the GUI resolves the address.
_______________________________________________ R-sig-mixed-models at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models * * * * * * * * * * * * * D I S C L A I M E R * * * * * * * * * * * * * Dit bericht en eventuele bijlagen geven enkel de visie van de schrijver weer en binden het INBO onder geen enkel beding, zolang dit bericht niet bevestigd is door een geldig ondertekend document. The views expressed in this message and any annex are purely those of the writer and may not be regarded as stating an official position of INBO, as long as the message is not confirmed by a duly signed document.
Federico Calboli <f.calboli at ...> writes:
Dear Thierry, thank you for letting me know. I though this link http://lme4.r-forge.r-project.org/repos/bin/macosx/leopard/contrib/3.0/ on the lme4 page meant it was, but that's not the case then. BW F On 9 Apr 2013, at 13:21, "ONKELINX, Thierry" <Thierry.ONKELINX at ...> wrote:
Dear Federico,
It seems that R-forge isn't yet updated to R 3.0.0. Hence the
packages are not available for R 3.0.0
Best regards, Thierry
lme4 status report, R-3.0.0 related: ** STABLE version (lme4 on CRAN, lme4.0 on r-forge) The MacOS binary build (only) on CRAN was missing because of some failed (relatively obscure) tests -- problem still not diagnosed, but for now I have commented these tests out. I've updated lme4.0 on r-forge (it's still building, see status at <http://r-forge.r-project.org/R/?group_id=60>) and have submitted the updated version _as lme4_ to CRAN: if all goes well that should propagate shortly (but not yet checked by the powers-that-be, so there could still be some glitches to resolve) I don't know if lme4.0-on-r-forge will be available for 3.0.0 or not once it successfully builds. ** DEVELOPMENT version (lme4 on github, and at lme4.r-forge repository) BINARIES I have added a recent MacOS binary at http://lme4.r-forge.r-project.org/repos/bin/macosx/contrib/3.0/ . This appears to be the correct path (install.packages(...) worked for me on MacOS/R-3.0.0). I am still trying to sort the repository tree out properly: the path above works, but http://cran.r-project.org/doc/manuals/R-admin.html# Setting-up-a-package-repository (broken URL!) suggests that MacOS binaries should be "located at bin/macosx/snowleopard/contrib/3.y for R versions 3.y.z" ... so I have added a copy there as well. SOURCE Still available on github for those with compile tools and devtools package installed: library("devtools") install_github("lme4",user="lme4")