Dear List I have posted the question below on Cross Validated as well, where you can find the image of the diagnostics plots. https://stats.stackexchange.com/questions/481109/truncated-negative-binomial-hurdle-model-for-continuous-data-glmmtmb I am running a hurdle model using the glmmTMB function. My dependent variable is continuous and >= 0. I was looking for a function that would allow me to model the binary response in a logistic regression (i.e the zero inflated model) and the non-zero response in a Gamma (log) regression (i.e the conditional model). However, the glmmTMB function does not allow to use the gamma family. I have two questions: 1. is there a function that allows to run a GLMM with gamma family? I tried to write my own code to have these two models but I am not sure about how to predict and calculate CIs. 2. Is it appropriate to use a truncated negative binomial family for the conditional (non-zero values) model? I ran the model: hpm_nb <- glmmTMB(percapita_dia ~ Tipo_residuo + (1|Trip_ID), zi=~Tipo_residuo, all, family=truncated_nbinom2) The diagnostics plots look good and model predictions are reasonable. Is it still wrong to have a truncated negative binomial family? Thanks for your help, Alessandra
GLMM hurdle model for continuous data -Truncated negative binomial family in glmmTMB?
2 messages · Alessandra Bielli, Ben Bolker
? Responded on CV.? Short answer: glmmTMB does have a 'ziGamma' family that should allow a zero-hurdle Gamma model ...
On 8/1/20 2:09 PM, Alessandra Bielli wrote:
Dear List I have posted the question below on Cross Validated as well, where you can find the image of the diagnostics plots. https://stats.stackexchange.com/questions/481109/truncated-negative-binomial-hurdle-model-for-continuous-data-glmmtmb I am running a hurdle model using the glmmTMB function. My dependent variable is continuous and >= 0. I was looking for a function that would allow me to model the binary response in a logistic regression (i.e the zero inflated model) and the non-zero response in a Gamma (log) regression (i.e the conditional model). However, the glmmTMB function does not allow to use the gamma family. I have two questions: 1. is there a function that allows to run a GLMM with gamma family? I tried to write my own code to have these two models but I am not sure about how to predict and calculate CIs. 2. Is it appropriate to use a truncated negative binomial family for the conditional (non-zero values) model? I ran the model: hpm_nb <- glmmTMB(percapita_dia ~ Tipo_residuo + (1|Trip_ID), zi=~Tipo_residuo, all, family=truncated_nbinom2) The diagnostics plots look good and model predictions are reasonable. Is it still wrong to have a truncated negative binomial family? Thanks for your help, Alessandra [[alternative HTML version deleted]]
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