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specifying crossed random effects for glmmPQL / lme

2 messages · Van Rynald Liceralde, Phillip Alday

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Thanks for your response, Ben! The paper that argued the use of the
identity link with Gamma for response time data is Lo & Andrews (2015) (doi:
10.3389/fpsyg.2015.01171 <https://dx.doi.org/10.3389%2Ffpsyg.2015.01171>).
Would such a model still be computationally problematic if the observed
values fall very much within the domain of the specified probability
distribution (i.e., valid response times are always above 200 ms)?

Re: "allow for correlations of random effects to be estimated", I've been
told that it's more tractable to estimate covariances between the random
slopes and intercepts (as I want with my model) using PQL than
Laplace/AGHQ. In fact, Lo & Andrews' demonstration using glmer explicitly
specified the covariances between the slopes and the intercepts to be 0 due
to the computational rigor of specifying a model with random
intercept-slope covariances in glmer and due to theoretical reasons.

And thanks for pointing out the Pinheiro & Bates (2000) reference to
specifying crossed effects!

Sincerely,
Van Liceralde
1 day later
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As an oblique not-quite-an answer ....

brms has an exponential Gaussian (exgaussian) option for the error
distribution / family, which as the documentation notes is "especially
suited to model reaction times". You have to go Bayesian, but you can
estimate crossed random effects and their associated correlations
without any special tricks.

Phillip
On 10/04/2017 09:55 PM, Van Rynald Liceralde wrote: