[Rcpp-devel] Pointer troubles

Hi Willem,

On 3 August 2011 at 12:13, Willem Ligtenberg wrote:
| Hi Dirk and list,
|
| Indeed it might have been a bit too complicated.
| I think I have another example, which explains my troubles without
| requiring OpenCL.
| In this case, I want to return a pointer to an integer value to R and
| the double the integer value in another function.
| (I know this is stupid to do, but it is a toy example)

Toy examples are good.

| // Stuff to expose the int to R
| static void intObjFinalizer(SEXP ref){
| ? ? ? ?if(TYPEOF(ref) == EXTPTRSXP){
| ? ? ? ? ? ? ? ?int *o = static_cast<int*> (R_ExternalPtrAddr(ref));
| ? ? ? ? ? ? ? ?if (o) delete o;
| ? ? ? ?}
| }
|
| SEXP int2EXP(int *o){
| ? ? ? ?SEXP xp = R_MakeExternalPtr(o, R_NilValue, R_NilValue);
| ? ? ? ?R_RegisterCFinalizerEx(xp, intObjFinalizer, TRUE);
| ? ? ? ?return xp;
| }
|
| int *SEXP2int(SEXP o){
| ? ? ? ?if(TYPEOF(o) != EXTPTRSXP)
| ? ? ? ? ? ? ? ?Rf_error("invalid object");
| ? ? ? ?return (int*) R_ExternalPtrAddr(o);
| }
|
| SEXP getIntPointer(){
| ? ? int test = 6;
| ? ? SEXP retVal = int2EXP(&test);

Isn't &test now the address of a temp object in the function getIntPointer ?
That memory space doesn't persist after the call.

Maybe you should take the address of a global (static) variable, or allocate
memory.

| ? ? std::cout << test << "\n";
| ? ? int test2 = *SEXP2int(retVal);
| ? ? std::cout << test2 << "\n";
| ? ? return retVal;
| }
|
| SEXP doubleIntPointer(SEXP test){
| ? ? int test2 = *SEXP2int(test);
| ? ? std::cout << test2;
| ? ? return Rcpp::wrap(test2*2);
| }
|
| By the way, I use a module to expose these functions:
|
| RCPP_MODULE(ropencl){
| ? ? ? using namespace Rcpp ;
| ? ? function( "getIntPointer" ?, &getIntPointer , "getIntPointer" ) ;
| ? ? function( "doubleIntPointer" ?, &doubleIntPointer , "doubleIntPointer" ) ;
| }
|
| When I now execute getIntPointer() from R, it seems to work fine, both
| the initial integer and the value that I get back from
| *SEXP2int(retVal); are 6. (Although when I exit R after only this call
| I get the following: *** glibc detected *** /usr/lib64/R/bin/exec/R:
| free(): invalid pointer: 0x00007fffd1a587cc ***)
|
| However, when I now use doubleIntPointer(getIntPointer()) in R, I get
| some wrong result (a different value each time I restart R).
|
| Does this make it a bit more clear what I want to do, or the problems
| that I am facing?

Does the above help?

Cheers, Dirk

| Kind regards,
|
| Willem
|
| On Tue, Aug 2, 2011 at 15:24, Dirk Eddelbuettel <edd at debian.org> wrote:
| >
| > Hi Willem,
| >
| > Thanks a pretty long and complicated post. ?Could we possibly break it down
| > into smaller pieces?
| >
| > On 2 August 2011 at 11:45, Willem Ligtenberg wrote:
| > | Hi,
| > |
| > | I am trying to wrap around OpenCL.
| > | But I am running into some problems when I try to return pointers to
| > | R. Later I want to be able to use these pointers in other c functions.
| > | As an example I have the following code:
| > |
| > | #include "createContext.h"
| > | #include <CL/opencl.h>
| > | #include <Rcpp.h>
| > |
| > | // Stuff to expose the cl_platform_id to R
| > | static void cl_platform_idObjFinalizer(SEXP ref){
| > | ? ? ? if(TYPEOF(ref) == EXTPTRSXP){
| > | ? ? ? ? ? ? ? cl_platform_id *o = static_cast<cl_platform_id*> (R_ExternalPtrAddr(ref));
| > | ? ? ? ? ? ? ? if (o) delete o;
| > | ? ? ? }
| > | }
| > |
| > | SEXP cl_platform_id2EXP(cl_platform_id *o){
| > | ? ? ? SEXP xp = R_MakeExternalPtr(o, R_NilValue, R_NilValue);
| > | ? ? ? R_RegisterCFinalizerEx(xp, cl_platform_idObjFinalizer, TRUE);
| > | ? ? ? return xp;
| > | }
| > |
| > | cl_platform_id *SEXP2cl_platform_id(SEXP o){
| > | ? ? ? if(TYPEOF(o) != EXTPTRSXP)
| > | ? ? ? ? ? ? ? Rf_error("invalid object");
| > | ? ? ? return (cl_platform_id*) R_ExternalPtrAddr(o);
| > | }
| > |
| > | This bit I have found posted on this mailing list earlier.
| > | This is to expose a pointer to a cl_platform_id object in memory (and
| > | this should also take care of the clean up).
| > |
| > | Now I have the following method to get a list of platform_ids:
| > |
| > | SEXP getPlatformIDs(){
| > | ? ? ? //returns a list of platform ids
| > | ? ? ? cl_uint num_platforms = 0;
| > | ? ? ? clGetPlatformIDs(0, 0, &num_platforms);
| > | ? ? ? std::vector<cl_platform_id> platforms(num_platforms);
| > | ? ? ? clGetPlatformIDs(num_platforms, platforms.empty() ? NULL :
| > | &platforms.front(), &num_platforms);
| > | ? ? ? //for each platform in platforms add its pointer to the return list
| > | ? ? ? Rcpp::List result(platforms.size());
| > | ? ? ? for (int i=0; i<platforms.size(); i++){
| > | ? ? ? ? cl_platform_id tempPlatformID = platforms[i];
| > | ? ? ? ? ? ? ? result[i] = cl_platform_id2EXP(&tempPlatformID);
| > | ? ? ? }
| > | ? ? ? return result;
| > | }
| > |
| > | And I want to get the name of the platform as follows:
| > |
| > | SEXP getPlatformName(SEXP sPlatformID){
| > | ? ? char cBuffer[1024];
| > | ? ? cl_platform_id platformID = *SEXP2cl_platform_id(sPlatformID);
| > | ? ? clGetPlatformInfo (platformID, CL_PLATFORM_NAME, sizeof(cBuffer),
| > | cBuffer, NULL);
| > | ? ? Rcpp::CharacterVector ab(1);
| > | ? ? ab[0] = cBuffer;
| > | ? ? return ab;
| >
| > You could use wrap() on std::string or char* if you just want to return a
| > single string. No need for a CharacterVector of size 1.
| >
| > | }
| > |
| > | The whole lot compiles, but gives a runtime error. When I try the
| > | following in R:
| > | library(ROpenCL)
| > | platformIDs <- getPlatformIDs()
| > | print(getPlatformName(platformIDs[[1]]))
| > |
| > | *** caught segfault ***
| > | address 0x51, cause 'memory not mapped'
| > |
| > | Now when I put all this together in one method which just returns the
| > | platform name, it works:
| > |
| > | SEXP getPlatformIDs2(){
| > | ? ? ? //returns a list of platform ids
| > | ? ? ? cl_uint num_platforms = 0;
| > | ? ? ? clGetPlatformIDs(0, 0, &num_platforms);
| > | ? ? ? std::vector<cl_platform_id> platforms(num_platforms);
| > | ? ? ? clGetPlatformIDs(num_platforms, platforms.empty() ? NULL :
| > | &platforms.front(), &num_platforms);
| > | ? ? ? char cBuffer[1024];
| > | ? ? clGetPlatformInfo (platforms[0], CL_PLATFORM_NAME,
| > | sizeof(cBuffer), cBuffer, NULL);
| > | ? ? Rcpp::CharacterVector ab(1);
| > | ? ? ab[0] = cBuffer;
| > | ? ? return ab;
| > | }
| > |
| > | This results in:
| > | getPlatformIDs2()
| > | [1] "NVIDIA CUDA"
| > |
| > | Could someone check if I am taking the pointer to and from R in the correct way?
| >
| > I can't as I do not know the OpenCL API.
| >
| > One thought is that maybe you do not you really need external pointers as you
| > are just copying IDs around. Can you simplify what you are trying to do?
| >
| > Cheers, Dirk
| >
| > --
| > Gauss once played himself in a zero-sum game and won $50.
| > ? ? ? ? ? ? ? ? ? ? ?-- #11 at http://www.gaussfacts.com
| >
| _______________________________________________
| Rcpp-devel mailing list
| Rcpp-devel at lists.r-forge.r-project.org
| https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel

--
Gauss once played himself in a zero-sum game and won $50.
? ? ? ? ? ? ? ? ? ? ?-- #11 at http://www.gaussfacts.com