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[Rcpp-devel] Rcpp compile question

4 messages · Henry Bee, Douglas Bates, Dirk Eddelbuettel

#
Hi Christian,

Thanks for the source file. Below are the full results as you requested.
It's giving the same error as before. Is 64-bit R supported?

Henry
'envir' chosen:<environment: R_GlobalEnv>
encoding = "native.enc" chosen
--> parsed 3 expressions; now eval(.)ing them:
=================
curr.fun: symbol require
 .. after ?expression(require(inline))?
=================
+ Rcpp::NumericVector xa(a);
+ Rcpp::NumericVector xb(b);
+ int n_xa = xa.size(), n_xb = xb.size();
+
+ Rcpp::NumericVector xab(n_xa + n_x .... [TRUNCATED]
curr.fun: symbol <-
 .. after ?expression(src <- '??Rcpp::NumericVector
xa(a);??Rcpp::NumericVector xb(b);??int n_xa = xa.size(), n_xb =
xb.size();????Rcpp::NumericVector xab(n_xa + n_xb - 1);??for (int i = 0; i <
n_xa; i++)??for (int j = 0; j < n_xb; j++)??xab[i + j] += xa[i] *
xb[j];??return xab;??')?
=================
plugin="Rcpp", verbose=TRUE)
 >> setting environment variables:
PKG_LIBS =
 D:/Users/Henry/Documents/R/win-library/2.12/Rcpp/lib/x64/libRcpp.a
 >> LinkingTo : Rcpp
CLINK_CPPFLAGS =
 -I"D:/Users/Henry/Documents/R/win-library/2.12/Rcpp/include"
 >> Program source :
   1 :
   2 : // includes from the plugin
   3 :
   4 : #include <Rcpp.h>
   5 :
   6 :
   7 : #ifndef BEGIN_RCPP
   8 : #define BEGIN_RCPP
   9 : #endif
  10 :
  11 : #ifndef END_RCPP
  12 : #define END_RCPP
  13 : #endif
  14 :
  15 : using namespace Rcpp;
  16 :
  17 :
  18 : // user includes
  19 :
  20 :
  21 : // declarations
  22 : extern "C" {
  23 : SEXP file5a2532f3( SEXP a, SEXP b) ;
  24 : }
  25 :
  26 : // definition
  27 :
  28 : SEXP file5a2532f3( SEXP a, SEXP b ){
  29 : BEGIN_RCPP
  30 :
  31 : Rcpp::NumericVector xa(a);
  32 : Rcpp::NumericVector xb(b);
  33 : int n_xa = xa.size(), n_xb = xb.size();
  34 :
  35 : Rcpp::NumericVector xab(n_xa + n_xb - 1);
  36 : for (int i = 0; i < n_xa; i++)
  37 : for (int j = 0; j < n_xb; j++)
  38 : xab[i + j] += xa[i] * xb[j];
  39 : return xab;
  40 :
  41 : END_RCPP
  42 : }
  43 :
  44 :
Compilation argument:
 C:\PROGRA~1\R\R-212~1.2/bin/x64/R CMD SHLIB file5a2532f3.cpp 2>
file5a2532f3.cpp.err.txt
ERROR(s) during compilation: source code errors or compiler configuration
errors!
Program source:
  1:
  2: // includes from the plugin
  3:
  4: #include <Rcpp.h>
  5:
  6:
  7: #ifndef BEGIN_RCPP
  8: #define BEGIN_RCPP
  9: #endif
 10:
 11: #ifndef END_RCPP
 12: #define END_RCPP
 13: #endif
 14:
 15: using namespace Rcpp;
 16:
 17:
 18: // user includes
 19:
 20:
 21: // declarations
 22: extern "C" {
 23: SEXP file5a2532f3( SEXP a, SEXP b) ;
 24: }
 25:
 26: // definition
 27:
 28: SEXP file5a2532f3( SEXP a, SEXP b ){
 29: BEGIN_RCPP
 30:
 31: Rcpp::NumericVector xa(a);
 32: Rcpp::NumericVector xb(b);
 33: int n_xa = xa.size(), n_xb = xb.size();
 34:
 35: Rcpp::NumericVector xab(n_xa + n_xb - 1);
 36: for (int i = 0; i < n_xa; i++)
 37: for (int j = 0; j < n_xb; j++)
 38: xab[i + j] += xa[i] * xb[j];
 39: return xab;
 40:
 41: END_RCPP
 42: }
 43:
 44:
Error in compileCode(f, code, language = language, verbose = verbose) :
  Compilation ERROR, function(s)/method(s) not created!
In addition: Warning message:
running command 'C:\PROGRA~1\R\R-212~1.2/bin/x64/R CMD SHLIB
file5a2532f3.cpp 2> file5a2532f3.cpp.err.txt' had status 1
2011/3/21 Christian Gunning <icos.atropa at gmail.com>
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#
On Tue, Mar 22, 2011 at 2:16 PM, Henry Bee <henry.bee at gmail.com> wrote:
64-bit R is supported.  Has it already been established that you have
the Rtools (compilers, linkers, etc.) from
www.murdoch-sutherland.com/Rtools/ installed?
#
Hi Douglas,

I assume I do not need to do anything with R after installing RTools? I
reinstalled RTools and restarted R and got the same errors.

Henry
On Tue, Mar 22, 2011 at 12:24 PM, Douglas Bates <bates at stat.wisc.edu> wrote:

            
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#
On 22 March 2011 at 14:15, Henry Bee wrote:
| Hi Douglas,
| 
| I assume I do not need to do anything with R after installing RTools?
| I reinstalled RTools and restarted R and got the same errors.

Please see Appendix D of the "R Installation and Administration" manual.
Rcpp is no different than other packages requiring compilation -- you need a
compiler etc properly setup and the manual tells you how to.  

Dirk

| 
| Henry
|
| On Tue, Mar 22, 2011 at 12:24 PM, Douglas Bates <bates at stat.wisc.edu> wrote:
|
| On Tue, Mar 22, 2011 at 2:16 PM, Henry Bee <henry.bee at gmail.com> wrote:
|     > Hi Christian,
|     > Thanks for the source file. Below are the full results as you requested.
|     > It's giving the same error as before. Is 64-bit R supported?
| 
|     64-bit R is supported. ?Has it already been established that you have
|     the Rtools (compilers, linkers, etc.) from
|     www.murdoch-sutherland.com/Rtools/ installed?
| 
|     >> source('tmp.R', verbose = TRUE)
|     > 'envir' chosen:<environment: R_GlobalEnv>
|     > encoding = "native.enc" chosen
|     > --> parsed 3 expressions; now eval(.)ing them:
|     >>>>> eval(expression_nr. 1 )
|     > ?? ? ? ? ? ? ? ? =================
|     >> require(inline)
|     > curr.fun: symbol require
|     > ?.. after ?expression(require(inline))?
|     >>>>> eval(expression_nr. 2 )
|     > ?? ? ? ? ? ? ? ? =================
|     >> src <- '
|     > + Rcpp::NumericVector xa(a);
|     > + Rcpp::NumericVector xb(b);
|     > + int n_xa = xa.size(), n_xb = xb.size();
|     > +
|     > + Rcpp::NumericVector xab(n_xa + n_x .... [TRUNCATED]
|     > curr.fun: symbol <-
|     > ?.. after ?expression(src <- '??Rcpp::NumericVector
|     > xa(a);??Rcpp::NumericVector xb(b);??int n_xa = xa.size(), n_xb =
|     > xb.size();????Rcpp::NumericVector xab(n_xa + n_xb - 1);??for
|     (int i = 0; i <
|     > n_xa; i++)??for (int j = 0; j < n_xb; j++)??xab[i + j] += xa[i] *
|     > xb[j];??return xab;??')?
|     >>>>> eval(expression_nr. 3 )
|     > ?? ? ? ? ? ? ? ? =================
|     >> fun <- cxxfunction( signature(a="numeric", b="numeric"), src,
|     >> plugin="Rcpp", verbose=TRUE)
|     > ?>> setting environment variables:
|     > PKG_LIBS =
|     > ?D:/Users/Henry/Documents/R/win-library/2.12/Rcpp/lib/x64/libRcpp.a
|     > ?>> LinkingTo : Rcpp
|     > CLINK_CPPFLAGS =
|     > ?-I"D:/Users/Henry/Documents/R/win-library/2.12/Rcpp/include"
|     > ?>> Program source :
|     > ?? 1 :
|     > ?? 2 : // includes from the plugin
|     > ?? 3 :
|     > ?? 4 : #include <Rcpp.h>
|     > ?? 5 :
|     > ?? 6 :
|     > ?? 7 : #ifndef BEGIN_RCPP
|     > ?? 8 : #define BEGIN_RCPP
|     > ?? 9 : #endif
|     > ??10 :
|     > ??11 : #ifndef END_RCPP
|     > ??12 : #define END_RCPP
|     > ??13 : #endif
|     > ??14 :
|     > ??15 : using namespace Rcpp;
|     > ??16 :
|     > ??17 :
|     > ??18 : // user includes
|     > ??19 :
|     > ??20 :
|     > ??21 : // declarations
|     > ??22 : extern "C" {
|     > ??23 : SEXP file5a2532f3( SEXP a, SEXP b) ;
|     > ??24 : }
|     > ??25 :
|     > ??26 : // definition
|     > ??27 :
|     > ??28 : SEXP file5a2532f3( SEXP a, SEXP b ){
|     > ??29 : BEGIN_RCPP
|     > ??30 :
|     > ??31 : Rcpp::NumericVector xa(a);
|     > ??32 : Rcpp::NumericVector xb(b);
|     > ??33 : int n_xa = xa.size(), n_xb = xb.size();
|     > ??34 :
|     > ??35 : Rcpp::NumericVector xab(n_xa + n_xb - 1);
|     > ??36 : for (int i = 0; i < n_xa; i++)
|     > ??37 : for (int j = 0; j < n_xb; j++)
|     > ??38 : xab[i + j] += xa[i] * xb[j];
|     > ??39 : return xab;
|     > ??40 :
|     > ??41 : END_RCPP
|     > ??42 : }
|     > ??43 :
|     > ??44 :
|     > Compilation argument:
|     > ?C:\PROGRA~1\R\R-212~1.2/bin/x64/R CMD SHLIB file5a2532f3.cpp 2>
|     > file5a2532f3.cpp.err.txt
|     > ERROR(s) during compilation: source code errors or compiler configuration
|     > errors!
|     > Program source:
|     > ??1:
|     > ??2: // includes from the plugin
|     > ??3:
|     > ??4: #include <Rcpp.h>
|     > ??5:
|     > ??6:
|     > ??7: #ifndef BEGIN_RCPP
|     > ??8: #define BEGIN_RCPP
|     > ??9: #endif
|     > ?10:
|     > ?11: #ifndef END_RCPP
|     > ?12: #define END_RCPP
|     > ?13: #endif
|     > ?14:
|     > ?15: using namespace Rcpp;
|     > ?16:
|     > ?17:
|     > ?18: // user includes
|     > ?19:
|     > ?20:
|     > ?21: // declarations
|     > ?22: extern "C" {
|     > ?23: SEXP file5a2532f3( SEXP a, SEXP b) ;
|     > ?24: }
|     > ?25:
|     > ?26: // definition
|     > ?27:
|     > ?28: SEXP file5a2532f3( SEXP a, SEXP b ){
|     > ?29: BEGIN_RCPP
|     > ?30:
|     > ?31: Rcpp::NumericVector xa(a);
|     > ?32: Rcpp::NumericVector xb(b);
|     > ?33: int n_xa = xa.size(), n_xb = xb.size();
|     > ?34:
|     > ?35: Rcpp::NumericVector xab(n_xa + n_xb - 1);
|     > ?36: for (int i = 0; i < n_xa; i++)
|     > ?37: for (int j = 0; j < n_xb; j++)
|     > ?38: xab[i + j] += xa[i] * xb[j];
|     > ?39: return xab;
|     > ?40:
|     > ?41: END_RCPP
|     > ?42: }
|     > ?43:
|     > ?44:
|     > Error in compileCode(f, code, language = language, verbose = verbose) :
|     > ??Compilation ERROR, function(s)/method(s) not created!
|     > In addition: Warning message:
|     > running command 'C:\PROGRA~1\R\R-212~1.2/bin/x64/R CMD SHLIB
|     > file5a2532f3.cpp 2> file5a2532f3.cpp.err.txt' had status 1
|     >>
|     >
|     >
|     > 2011/3/21 Christian Gunning <icos.atropa at gmail.com>
|     >>
|     >> "Here's the command:"
|     >>
|     >> Works for me. ?Try sourcing the attached file (which includes your
|     >> command, +verbose=T), and post back the *full* results, including the
|     >> source('tmp.R.txt') command and the next prompt line.
|     >>
|     >> -christian
|     >>
|     >> --
|     >> A man, a plan, a cat, a ham, a yak, a yam, a hat, a canal ? Panama!
|     >
|     >
|     > _______________________________________________
|     > Rcpp-devel mailing list
|     > Rcpp-devel at lists.r-forge.r-project.org
|     > https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
|     >
|     >
| 
| 
| 
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