Dear mailing list, For a project I am working on speeding up a simulation in R by translating it to C++ (using inline and Rcpp). It is done and works fine on my windows 7 64bit R, but for some reason it is not working on my supervisors latest mac OSX (not sure of the version. should be up to date). The strange thing is that it did work at first. It compiled and ran as expected. We then proceeded by changing a few things, resulting in the function not compiling anymore. When we then used exactly the same script as before it suddenly did not work anymore. I get these errors: Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! file345af547.cpp: In function ?SEXPREC* file345af547(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)?: file345af547.cpp:220: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/include/Rcpp/sugar/operators/minus.h:421: note: candidate 1: Rcpp::sugar::Minus_Vector_Primitive<RTYPE, NA, T> operator-(const Rcpp::VectorBase<RTYPE, NA, VECTOR>&, typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 14, bool NA = true, T = Rcpp::Vector<14>] file345af547.cpp:220: note: candidate 2: operator-(SEXPREC*, int) <built-in> file345af547.cpp:646: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/librar In addition: Warning message: running command '/Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB file345af547.cpp 2> file345af547.cpp.err.txt' had status 1 With relevant lines: 220 : Demoplayers = Demoplayers - 1; 646 : leeftijd = leeftijd + 1; Demoplayers and leeftijd are both NumericVectors. Does anyone know if there is a common bug on MacOSX that for some reason makes the inline compiler not work anymore? The cxxfunction example works fine though. Best, Sacha -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.r-forge.r-project.org/pipermail/rcpp-devel/attachments/20110516/e452a650/attachment.htm>
[Rcpp-devel] Function does not compile on Mac OSX
5 messages · Romain Francois, Sacha Epskamp, Steve Lianoglou
Hello, Let's try to narrow this down. Please provide a small and reproducible example. What is the version of the compiler. This is what I have on my iMac: $ g++ --version i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. What version of Rcpp are you using. What version of R. Romain Le 16/05/11 12:06, Sacha Epskamp a ?crit :
Dear mailing list, For a project I am working on speeding up a simulation in R by translating it to C++ (using inline and Rcpp). It is done and works fine on my windows 7 64bit R, but for some reason it is not working on my supervisors latest mac OSX (not sure of the version. should be up to date). The strange thing is that it did work at first. It compiled and ran as expected. We then proceeded by changing a few things, resulting in the function not compiling anymore. When we then used exactly the same script as before it suddenly did not work anymore. I get these errors: Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! file345af547.cpp: In function ?SEXPREC* file345af547(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)?: file345af547.cpp:220: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/include/Rcpp/sugar/operators/minus.h:421: note: candidate 1: Rcpp::sugar::Minus_Vector_Primitive<RTYPE, NA, T> operator-(const Rcpp::VectorBase<RTYPE, NA, VECTOR>&, typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 14, bool NA = true, T = Rcpp::Vector<14>] file345af547.cpp:220: note: candidate 2: operator-(SEXPREC*, int) <built-in> file345af547.cpp:646: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/librar In addition: Warning message: running command '/Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB file345af547.cpp 2> file345af547.cpp.err.txt' had status 1 With relevant lines: 220 : Demoplayers = Demoplayers - 1; 646 : leeftijd = leeftijd + 1; Demoplayers and leeftijd are both NumericVectors. Does anyone know if there is a common bug on MacOSX that for some reason makes the inline compiler not work anymore? The cxxfunction example works fine though. Best, Sacha
Romain Francois Professional R Enthusiast +33(0) 6 28 91 30 30 http://romainfrancois.blog.free.fr http://romain-francois.com |- http://bit.ly/hdKhCy : Rcpp article in JSS |- http://bit.ly/elZJRJ : Montpellier Comedie Club - Avril 2011 `- http://bit.ly/fhqbRC : Rcpp workshop in Chicago on April 28th
Hi,
Here is a small example:
library("Rcpp")
library("inline")
fun <-cxxfunction(,
'
Environment e = Environment::global_env();
NumericVector bar = e["foo"];
bar = bar + 1;
return wrap(bar);
',plugin="Rcpp")
foo <- 1:10
fun()
This function works fine on my windows netbook, but does not work on my
supervisors mac. His computers specs are:
++++++++++
platform i386-apple-darwin9.8.0
arch i386
os darwin9.8.0
system i386, darwin9.8.0
status
major 2
minor 13.0
year 2011
month 04
day 13
svn rev 55427
language R
version.string R version 2.13.0 (2011-04-13)
++++++++++++++
packageDescription('Rcpp')
Package: Rcpp
Title: Seamless R and C++ Integration
Version: 0.9.4
+++++++++++++++
packageDescription('Inline')
Package: inline Version: 0.3.8 Date: 2010-12-07 ++++++++++++++++
system("g++ --version")
i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Best, Sacha 2011/5/16 Romain Francois <romain at r-enthusiasts.com>
Hello, Let's try to narrow this down. Please provide a small and reproducible example. What is the version of the compiler. This is what I have on my iMac: $ g++ --version i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. What version of Rcpp are you using. What version of R. Romain Le 16/05/11 12:06, Sacha Epskamp a ?crit : Dear mailing list,
For a project I am working on speeding up a simulation in R by translating it to C++ (using inline and Rcpp). It is done and works fine on my windows 7 64bit R, but for some reason it is not working on my supervisors latest mac OSX (not sure of the version. should be up to date). The strange thing is that it did work at first. It compiled and ran as expected. We then proceeded by changing a few things, resulting in the function not compiling anymore. When we then used exactly the same script as before it suddenly did not work anymore. I get these errors: Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! file345af547.cpp: In function ?SEXPREC* file345af547(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)?: file345af547.cpp:220: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/include/Rcpp/sugar/operators/minus.h:421: note: candidate 1: Rcpp::sugar::Minus_Vector_Primitive<RTYPE, NA, T> operator-(const Rcpp::VectorBase<RTYPE, NA, VECTOR>&, typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 14, bool NA = true, T = Rcpp::Vector<14>] file345af547.cpp:220: note: candidate 2: operator-(SEXPREC*, int) <built-in> file345af547.cpp:646: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/librar In addition: Warning message: running command '/Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB file345af547.cpp 2> file345af547.cpp.err.txt' had status 1 With relevant lines: 220 : Demoplayers = Demoplayers - 1; 646 : leeftijd = leeftijd + 1; Demoplayers and leeftijd are both NumericVectors. Does anyone know if there is a common bug on MacOSX that for some reason makes the inline compiler not work anymore? The cxxfunction example works fine though. Best, Sacha
-- Romain Francois Professional R Enthusiast +33(0) 6 28 91 30 30 http://romainfrancois.blog.free.fr http://romain-francois.com |- http://bit.ly/hdKhCy : Rcpp article in JSS |- http://bit.ly/elZJRJ : Montpellier Comedie Club - Avril 2011 `- http://bit.ly/fhqbRC : Rcpp workshop in Chicago on April 28th
_______________________________________________ Rcpp-devel mailing list Rcpp-devel at lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
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And the error he gets is: Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! file786264e8.cpp: In function ?SEXPREC* file786264e8()?: file786264e8.cpp:33: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/include/Rcpp/sugar/operators/plus.h:451: note: candidate 1: Rcpp::sugar::Plus_Vector_Primitive<RTYPE, NA, T> operator+(const Rcpp::VectorBase<RTYPE, NA, VECTOR>&, typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 14, bool NA = true, T = Rcpp::Vector<14>] file786264e8.cpp:33: note: candidate 2: operator+(SEXPREC*, int) <built-in> make: *** [file786264e8.o] Error 1 In addition: Warning message: running command '/Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB file786264e8.cpp 2> file786264e8.cpp.err.txt' had status 1 2011/5/16 Sacha Epskamp <sacha.epskamp at gmail.com>
Hi,
Here is a small example:
library("Rcpp")
library("inline")
fun <-cxxfunction(,
'
Environment e = Environment::global_env();
NumericVector bar = e["foo"];
bar = bar + 1;
return wrap(bar);
',plugin="Rcpp")
foo <- 1:10
fun()
This function works fine on my windows netbook, but does not work on my
supervisors mac. His computers specs are:
++++++++++
platform i386-apple-darwin9.8.0
arch i386
os darwin9.8.0
system i386, darwin9.8.0
status
major 2
minor 13.0
year 2011
month 04
day 13
svn rev 55427
language R
version.string R version 2.13.0 (2011-04-13)
++++++++++++++
packageDescription('Rcpp')
Package: Rcpp
Title: Seamless R and C++ Integration
Version: 0.9.4
+++++++++++++++
packageDescription('Inline')
Package: inline Version: 0.3.8 Date: 2010-12-07 ++++++++++++++++
system("g++ --version")
i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Best, Sacha 2011/5/16 Romain Francois <romain at r-enthusiasts.com>
Hello, Let's try to narrow this down. Please provide a small and reproducible example. What is the version of the compiler. This is what I have on my iMac: $ g++ --version i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. What version of Rcpp are you using. What version of R. Romain Le 16/05/11 12:06, Sacha Epskamp a ?crit : Dear mailing list,
For a project I am working on speeding up a simulation in R by translating it to C++ (using inline and Rcpp). It is done and works fine on my windows 7 64bit R, but for some reason it is not working on my supervisors latest mac OSX (not sure of the version. should be up to date). The strange thing is that it did work at first. It compiled and ran as expected. We then proceeded by changing a few things, resulting in the function not compiling anymore. When we then used exactly the same script as before it suddenly did not work anymore. I get these errors: Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! file345af547.cpp: In function ?SEXPREC* file345af547(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)?: file345af547.cpp:220: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/include/Rcpp/sugar/operators/minus.h:421: note: candidate 1: Rcpp::sugar::Minus_Vector_Primitive<RTYPE, NA, T> operator-(const Rcpp::VectorBase<RTYPE, NA, VECTOR>&, typename Rcpp::traits::storage_type<RTYPE>::type) [with int RTYPE = 14, bool NA = true, T = Rcpp::Vector<14>] file345af547.cpp:220: note: candidate 2: operator-(SEXPREC*, int) <built-in> file345af547.cpp:646: error: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second: /Library/Frameworks/R.framework/Versions/2.13/Resources/librar In addition: Warning message: running command '/Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB file345af547.cpp 2> file345af547.cpp.err.txt' had status 1 With relevant lines: 220 : Demoplayers = Demoplayers - 1; 646 : leeftijd = leeftijd + 1; Demoplayers and leeftijd are both NumericVectors. Does anyone know if there is a common bug on MacOSX that for some reason makes the inline compiler not work anymore? The cxxfunction example works fine though. Best, Sacha
-- Romain Francois Professional R Enthusiast +33(0) 6 28 91 30 30 http://romainfrancois.blog.free.fr http://romain-francois.com |- http://bit.ly/hdKhCy : Rcpp article in JSS |- http://bit.ly/elZJRJ : Montpellier Comedie Club - Avril 2011 `- http://bit.ly/fhqbRC : Rcpp workshop in Chicago on April 28th
_______________________________________________ Rcpp-devel mailing list Rcpp-devel at lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel
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Hi, For what it's worth, your code works fine on my mac: R> ... your code ... R> fun() [1] 2 3 4 5 6 7 8 9 10 11 R> sessionInfo() R version 2.13.0 Patched (2011-05-11 r55852) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) ... Also: $ g++ --version i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3) ... I'm not sure how helpful that is, though, as it seems my system is a bit different than your advisor's. For instance, I'm running snow leopard (10.6), where it seems your advisor is running Leopard (10.5) I'm also running in 64bit mode, and your advisor is running 32bit. I'm not sure if that's a big difference, but maybe he can force R to run in 64bit as a test? Oh .. I'm also running R 2.13.0 (Patched), which you can get here: http://r.research.att.com/ In the row of that yellow table named "R-2.13-branch" -steve
++++++++++ platform ??????i386-apple-darwin9.8.0 arch ??????????i386 os ????????????darwin9.8.0 system ????????i386, darwin9.8.0 status major ?????????2 minor ?????????13.0 year ??????????2011 month ?????????04 day ???????????13 svn rev ???????55427 language ??????R version.string R version 2.13.0 (2011-04-13)
[snip]
system("g++ --version")
i686-apple-darwin10-g++-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. ?There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact