[Rcpp-devel] Rcpp-devel Digest, Vol 61, Issue 3

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Today's Topics:

   1. Can't compile BOOST package via Rcpp on Windows7 OS (??? ???????)
   2. Re: Can't compile BOOST package via Rcpp on Windows7 OS
      (Dirk Eddelbuettel)
   3. Re: Can't compile BOOST package via Rcpp on Windows7 OS
      (Dirk Eddelbuettel)
   4. Re: Can't compile BOOST package via Rcpp on Windows7 OS
      (Gabor Grothendieck)


----------------------------------------------------------------------

Message: 1
Date: Tue, 11 Nov 2014 16:51:53 +0200
From: ??? ??????? <david.arenburg at gmail.com>
To: rcpp-devel at lists.r-forge.r-project.org
Subject: [Rcpp-devel] Can't compile BOOST package via Rcpp on Windows7
        OS
Message-ID:
        <
CAL6upbb-a_v56XVimHijZTUeFDa1Bfmr1Svkkb5D+JsM_gB8vQ at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"

Hi guys,

So I've installed and loaded the BH
<http://cran.r-project.org/web/packages/BH/index.html> package without any
errors, then I tried to run this example
<http://gallery.rcpp.org/articles/a-first-boost-example/> but sourceCpp
failed to compile it. I was wondering if there is a quick fix for this and
I'm just making some very basic mistake here

I saw this
<
http://stackoverflow.com/questions/19651954/is-it-possible-to-build-an-r-package-which-use-rcpp-and-boost-thread-on-win-b

post
lately and I'm not sure if this means that I just can't compile BH on
windows or just can't build a package which depends on it

As a side note, I was trying to add the quantile() function from BOOST to
this
<
http://stackoverflow.com/questions/26786078/rcpp-quantile-implementation/26789292#26789292

SO
answer in order to improve it for future readers as I didn't find any nice
BOOST/Rcpp implementations online other than in Dirks Gallery

Thanks,
David

---

sessionInfo()
R version 3.1.1 (2014-07-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Hebrew_Israel.1255  LC_CTYPE=Hebrew_Israel.1255
 LC_MONETARY=Hebrew_Israel.1255
[4] LC_NUMERIC=C                   LC_TIME=Hebrew_Israel.1255

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] Rcpp_0.11.3 BH_1.54.0-4

loaded via a namespace (and not attached):
[1] tools_3.1.1
-------------- next part --------------
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------------------------------

Message: 2
Date: Tue, 11 Nov 2014 09:14:39 -0600
From: Dirk Eddelbuettel <edd at debian.org>
To: ??? ???????  <david.arenburg at gmail.com>
Cc: rcpp-devel at lists.r-forge.r-project.org
Subject: Re: [Rcpp-devel] Can't compile BOOST package via Rcpp on
        Windows7 OS
Message-ID: <21602.10207.495958.672521 at max.nulle.part>
Content-Type: text/plain; charset=utf-8


On 11 November 2014 at 16:51, ??? ??????? wrote:
| Hi guys,
|
| So I've installed and loaded the?BH?package without any errors, then I
tried to
| run?this example?but sourceCpp failed to compile it. I was wondering if
there
| is a quick fix for this and I'm just making some very basic mistake here
|
| I saw?this?post lately and I'm not sure if this means that I just can't
compile
| BH on windows or just can't build a package which depends on it
|
| As a side note, I was trying to add the quantile() function from BOOST
to?this
| ?SO answer in order to improve it for future readers as I didn't find
any nice
| BOOST/Rcpp implementations online other than in Dirks Gallery

No error report came along :-/

But there is no known road block for BH -- as a CRAN package, it is happily
use by win-builder as well as the standard R builder for Windows.  We have
over two dozen packages now depending on BH.

Dirk

|
| Thanks,
| David
|
| ---
|
| sessionInfo()
| R version 3.1.1 (2014-07-10)
| Platform: x86_64-w64-mingw32/x64 (64-bit)
|
| locale:
| [1] LC_COLLATE=Hebrew_Israel.1255 ?LC_CTYPE=Hebrew_Israel.1255 ?
?LC_MONETARY=
| Hebrew_Israel.1255
| [4] LC_NUMERIC=C ? ? ? ? ? ? ? ? ? LC_TIME=Hebrew_Israel.1255 ? ?
|
| attached base packages:
| [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base ? ??
|
| other attached packages:
| [1] Rcpp_0.11.3 BH_1.54.0-4
|
| loaded via a namespace (and not attached):
| [1] tools_3.1.1
| _______________________________________________
| Rcpp-devel mailing list
| Rcpp-devel at lists.r-forge.r-project.org
| https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/rcpp-devel

--
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org


------------------------------

Message: 3
Date: Tue, 11 Nov 2014 09:46:44 -0600
From: Dirk Eddelbuettel <edd at debian.org>
To: ??? ???????  <david.arenburg at gmail.com>
Cc: rcpp-devel at lists.r-forge.r-project.org
Subject: Re: [Rcpp-devel] Can't compile BOOST package via Rcpp on
        Windows7 OS
Message-ID: <21602.12132.705103.600405 at max.nulle.part>
Content-Type: text/plain; charset=us-ascii


David,

And for good measure, I just dropped the very first Rcpp Gallery example
into
RStudio on my work machine (which, while being Windows, mostly serves for
receiving x11 terminals from Linux). It passed without any issues:

R> Rcpp::sourceCpp('C:/TEMP/boostEx.cpp', verbose=TRUE, rebuild=TRUE)

Generated extern "C" functions
--------------------------------------------------------


#include <Rcpp.h>

RcppExport SEXP sourceCpp_32214_computeGCD(SEXP aSEXP, SEXP bSEXP) {
BEGIN_RCPP
    SEXP __sexp_result;
    {
        Rcpp::RNGScope __rngScope;
        Rcpp::traits::input_parameter< int >::type a(aSEXP );
        Rcpp::traits::input_parameter< int >::type b(bSEXP );
        int __result = computeGCD(a, b);
        PROTECT(__sexp_result = Rcpp::wrap(__result));
    }
    UNPROTECT(1);
    return __sexp_result;
END_RCPP
}

RcppExport SEXP sourceCpp_32214_computeLCM(SEXP aSEXP, SEXP bSEXP) {
BEGIN_RCPP
    SEXP __sexp_result;
    {
        Rcpp::RNGScope __rngScope;
        Rcpp::traits::input_parameter< int >::type a(aSEXP );
        Rcpp::traits::input_parameter< int >::type b(bSEXP );
        int __result = computeLCM(a, b);
        PROTECT(__sexp_result = Rcpp::wrap(__result));
    }
    UNPROTECT(1);
    return __sexp_result;
END_RCPP
}

Generated R functions
-------------------------------------------------------

`.sourceCpp_32214_DLLInfo` <-

dyn.load('C:/Users/DEDDEL~1/AppData/Local/Temp/Rtmpa00Mwv/sourcecpp_21f846bbab5/sourceCpp_2293.dll')

computeGCD <- Rcpp:::sourceCppFunction(function(a, b) {}, FALSE,
`.sourceCpp_32214_DLLInfo`, 'sourceCpp_32214_computeGCD')
computeLCM <- Rcpp:::sourceCppFunction(function(a, b) {}, FALSE,
`.sourceCpp_32214_DLLInfo`, 'sourceCpp_32214_computeLCM')

rm(`.sourceCpp_32214_DLLInfo`)

Building shared library
--------------------------------------------------------

DIR: C:/Users/DEDDEL~1/AppData/Local/Temp/Rtmpa00Mwv/sourcecpp_21f846bbab5

C:/opt/R-CURR~1/bin/x64/R CMD SHLIB -o "sourceCpp_2293.dll" --preclean
"boostEx.cpp"
g++ -m64 -I"C:/opt/R-CURR~1/include" -DNDEBUG
-I"c:/opt/R-library/Rcpp/include" -I"c:/opt/R-library/BH/include"
-I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall
-mtune=core2
-c boostEx.cpp -o boostEx.o
g++ -m64 -shared -s -static-libgcc -o sourceCpp_2293.dll tmp.def boostEx.o
-Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64
-Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/opt/R-CURR~1/bin/x64 -lR
R>


Hth, Dirk

--
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org


------------------------------

Message: 4
Date: Tue, 11 Nov 2014 10:46:52 -0500
From: Gabor Grothendieck <ggrothendieck at gmail.com>
To: ??? ??????? <david.arenburg at gmail.com>
Cc: "rcpp-devel at lists.r-forge.r-project.org"
        <rcpp-devel at lists.r-forge.r-project.org>
Subject: Re: [Rcpp-devel] Can't compile BOOST package via Rcpp on
        Windows7 OS
Message-ID:
        <CAP01uRkYyL=
NbZsZ6P+9OfA2SuGoM1NVq_RTuNkLF1vzCWK+KA at mail.gmail.com>
Content-Type: text/plain; charset=UTF-8

On Tue, Nov 11, 2014 at 9:51 AM, ??? ??????? <david.arenburg at gmail.com>
wrote:

Hi guys,

So I've installed and loaded the BH package without any errors, then I

tried

to run this example but sourceCpp failed to compile it. I was wondering

if

there is a quick fix for this and I'm just making some very basic mistake
here

I saw this post lately and I'm not sure if this means that I just can't
compile BH on windows or just can't build a package which depends on it

As a side note, I was trying to add the quantile() function from BOOST to
this SO answer in order to improve it for future readers as I didn't find
any nice BOOST/Rcpp implementations online other than in Dirks Gallery

Thanks,
David

---

sessionInfo()
R version 3.1.1 (2014-07-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Hebrew_Israel.1255  LC_CTYPE=Hebrew_Israel.1255
LC_MONETARY=Hebrew_Israel.1255
[4] LC_NUMERIC=C                   LC_TIME=Hebrew_Israel.1255

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] Rcpp_0.11.3 BH_1.54.0-4

loaded via a namespace (and not attached):
[1] tools_3.1.1

Calling the file test_boost.cpp this ran without errors for me:

library(Rcpp)
sourceCpp("test_boost.cpp")

and repeating the test runs shown at the link you mentioned gave the
same answers as there.  I am using Windows 8.1, the same Rcpp and BH
versions as you and

R.version.string

[1] "R version 3.1.2 RC (2014-10-25 r66870)"

and this version of Rtools:

C:\Rtools>type VERSION.txt
Rtools version 3.1.0.1942





--
Statistics & Software Consulting
GKX Group, GKX Associates Inc.
tel: 1-877-GKX-GROUP
email: ggrothendieck at gmail.com


------------------------------