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Dear R users, I am trying to generate a treemap using the package Treemap on R and I'm encountering the subsequent error: *Error in if (rec[3] < rec[4]) { : missing value where TRUE/FALSE needed* I did traceback() and...

I have a question about a build error that I am seeing on tokay1 for a submitted package (motifmatchr <https://github.com/Bioconductor/Contributions/issues/293>): Warning in file(con, "r") : cannot open file 'C:/Users/BIOCBU~1/BBS-3...

I have two new packages in latest release of Bioconductor, and am having issues pushing to the git repo for one. One was accepted when BioC was still using SVN, and the other after transition to git. I first entered...

Let's say I have repeated measures of some outcome on some subjects. I want to be able to calculate the within and between subject coefficient of variation for this measure. An example data frame is: df<-data.frame(ID...

I would be gratefulf if anybody can help me with this problem. I have not a experience with R language, actually this is my first job with it : I have write some instructions for acomplish a simulation, and I have...

Assume I have a dataframe with 3 categorical variables: > df <- data.frame(MRN = c("1", "1", "1", "2", "2", "2", "2"), VN = c("A","A", "B", "C", "D", "E", "E"), LABS = c("P", "Q", "R", "S", "T", "P", "Q")) > df...

Hi, I have a two questions about the bioconductor build and BiocCheck process when submitting packages. 1) My submitted package ('motifmatchr') returns the following warning on the Windows computer: Warning: file 'motifmatchr/cleanup' did not have execute permissions: corrected How...

I am sorry, one of the colummns of the example data was oddly displaced. Here it should be right (I hope). rev site species repl cover treat seedlings 1 1 0 1 low A 3 1 1 0 1 low...

p.adjust for bonferroni p value correction does not appear to be working correctly: > p <- runif(50) > > p [1] 0.08280254 0.08955706 0.19754389 0.52812033 0.68907772 0.21849696 0.02774784 0.23923562 0.03482480 0.76437481 0...

Hi, I'm trying to install de RSPerl module and i have some problems trying to test it. I've tried to contact with the author but the e-mail address seems not to exist. Hope that anyone in this...

Great, thanks for the update! -Alicia On Mon, Jun 12, 2017 at 6:14 AM Obenchain, Valerie < Valerie.Obenchain at roswellpark.org> wrote: > Just closing the loop on this one. Permissions on the Windows Makeconf > were fixed - this error should...

Dear all, I am interested in solving a MIP problem with binary outcomes and continuous variables, which ARE NOT RESTRICTED TO BE NEGATIVE. In particular, Max {z1,z2,z3,b1} z1 + z2 + z3 (s.t.) # 7 z1 + 0 z2 + 0...

Hello Everyone, My coauthor and I are working on a meta-analysis in which we want to know the relationship (direction and magnitude) between a variable (mean difference on the x-axis) and a log response ratio (on the y...

Dear R-help, I used the correlog function of pgirmess package to create a spatial correlogram for Moran's I. The function gives Moran's coefficient with a p value for each distance class. My question is what is the...

Hi James, Happy new year and thank you so much for your thoughtful response. We're working with plants but thought bird ecology might be a more tangible example. Let's say having a longer beak means you get more...

Dear members of the list, This is my first message and as I am very new to GLMMs (and my statistical knowledge is far from broad) I hope to formulate my questions adequately. I have spent some days reading through...

The solution proposed below does not accomplish my goal. In the column labeled NEW_VALUE, there are two NAs where the value in NUMERIC_VALUE for that row should be. Can anyone else suggest a solution to my problem? Thanks...

I am trying to use R lm() with quantitative and qualitative predictors, but am getting different results than those that I get in SAS. In the R ANOVA table documentation I see that "Type-II tests corresponds to the tests...

Thanks for the clarification! I will ignore these warnings. -Alicia On Thu, Mar 23, 2017 at 7:36 AM Leonardo Collado Torres <lcollado at jhu.edu> wrote: You can also test your package on R Travis against R 3.4...

Hi Gavin, I have been analyzing real data (sorry but I am not allowed to post these data here) and what I got was this, mydistmat_f.cap <- capscale(distmat_f ~ F + L + F:L, mfactors_frame) Warning messages: 1...