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Currently, the codetoolsBioC package is available via: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/codetoolsBioC Can codetoolsBioC be mirrored on GitHub like the other BioC packages, or is that only possible for built and distributed BioC package? Thanks, Henrik

FYI, http://bioconductor.org/checkResults/release/bioc-LATEST/ still points to http://bioconductor.org/checkResults/2.8/bioc-LATEST/ (The former URL is used on for instance http://www.bioconductor.org/developers/) /Henrik

'R --debug' and 'Rterm --debug' crash R on Windows. Indeed, --debug is not a documented command line option, but it still causes a crash. This occurs with R v2.15.0 patched and R devel - both from 2012-04-09...

Hi, I've get the following on both strider and frodo: frodo{hb}: hpush -v Sorry, user hb is not allowed to execute '/usr/local/bin/hpush -v' as upush on frodo.Berkeley.EDU. Strange, because it worked when we...

FYI: > source("http://www.bioconductor.org/biocLite.R") Error in file(file, "r", encoding = encoding) : unable to open connection In addition: Warning message: cannot open: HTTP status was '403 Forbidden' This happens both from the US and from Sweden. /Henrik

Under 'CHANGES IN R VERSION 2.14.2' in NEWS, there is: "R CMD check has a new option -as-cran to turn on most of the customizations that CRAN uses for its incoming checks." "-as-cran" should be "--as...

Hi, according to http://bioconductor.org/packages/2.1/bioc/html/affxparser.html there is no release version of 'affxparser' available for OSX. ...and the devel version is out of date: http://bioconductor.org/packages/2.2/bioc/html/affxparser...

I'm just curious (no complaints), what was the reason for choosing the letter 'L' as a suffix for integer constants? Does it stand for something (literal?), is it because it visually stands out, ..., or no specific reason at all...

FYI, the download link on CRAN for R-2.3.1pat-win32.exe and related files seems to be broken at least since yesterday, e.g. http://cran.at.r-project.org/bin/windows/base/R-2.3.1pat-win32...

Hi, I guess the answer will be no, because of the different underlying operating systems, but just in case: Is there a way to open a file such that it is locked for other processes to write to it (until...

I'd like to set a temporary time limit with setTimeLimit() and then undo these set time limits, i.e. return back to whatever the time limits were before. Is it possible to get the current time limits (e.g...

A minor comment: in help(environment) the example starts with: ##-- all three give the same: environment() environment(environment) .GlobalEnv but the comment is not true. The second returns the "<environment: namespace:base>". "R : Copyright 2006, The R Foundation for Statistical...

Is there a missing value constant defined for R_xlen_t, cf. NA_INTEGER (== R_NaInt == INT_MIN) for int(eger)? If not, is it correct to assume that missing values should be taken care/tested for before coercing from...

FYI and for the R-forge maintainers information: Trying to access http://r-forge.r-project.org/ at this very moment gives: "An error occured in the logger. ERROR: could not extend relation 1663/19060/19983: No space left on...

In my aroma.light package I noticed a change (in the devel) on Dec 16, 2008 "removed quotes from do.call" done by "n.gopalakrishnan". Then I noticed that many other packages was modified the same. Why was this done...

FYI, 64-bit Windows binaries of gcrma are built for Bioconductor devel (2.8): http://bioconductor.org/packages/2.8/bioc/html/gcrma.html They are for the release version (2.7): http://bioconductor.org/packages/2.7/bioc/html...

I've noticed this for a while and thought it was a temporary glitch, or maybe I missed some announcement about it, but it appears that NEWS files are no longed listed on the Bioc package pages, e.g. https...

Hi, I just have drop a note to say that the 'codetools' (and the part of R CMD check that use it) is a pleasure to use and saves me from hours of troubleshooting. Each time it finds something I...

FYI/to the maintainers of r-forge: R-forge seems to be down: 1. http://r-forge.r-project.org/ gives minimal page "R-Forge Could Not Connect to Database:". 2. svn+ssh://<user name>@svn.r-forge.r-project...

Hi again, like 'affxparser', there are problems with 'affyPLM'. According to http://bioconductor.org/packages/2.1/bioc/html/affyPLM.html there is no release version of 'affyPLM' available for OSX. ...and the devel version for OSX is out of...