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2,306 results for “from:Hervé Pagès”

[Bioc-devel] HTTP GET and POST with RCurl | RMySQL
Hervé Pagès · Jan 23, 2006 · bioc-devel

Vincent Carey 525-2265 wrote: >your question here might best be directed to r-devel. > > > Also for DB related stuff, you can try r-sig-db at stat.math.ethz.ch Regards, H. -- ------------------------ Herv? Pag?s E-mail: hpages at...

[Bioc-devel] %over% and %within% are ready
Hervé Pagès · Jan 17, 2013 · bioc-devel

Hi, Convenience wrappers %over% and %within% (wrappers for overlapsAny()) are in IRanges 1.17.26. Warnings and deprecation messages for %in% between range-based objects have been modified to suggest the use of %over% as a replacement (instead of overlapsAny...

crash with NAs in subscripted assignment of a raw vector
Hervé Pagès · Sep 25, 2009 · r-devel

Seth Falcon wrote: > 2009/9/24 Herv? Pag?s <hpages at fhcrc.org>: >> > x <- charToRaw("ABCDEFGx") >> > x[c(1:3, NA, 6)] <- x[8] >> >> *** caught segfault *** >> address 0x8402423f, cause 'memory not mapped' > > Thanks for the report. I have a fix...

[Bioc-devel] websites shutdown at 2pm
Hervé Pagès · Dec 18, 2007 · bioc-devel

Hi, For maintenance purpose, we will need to reboot our servers hosting bioconductor.org and cran.fhcrc.org today at 2pm (Seattle time). All services hosted on these servers will be down for 10-20 minutes. Note that during this...

Couldn't (and shouldn't) is.unsorted() be faster?
Hervé Pagès · Apr 17, 2008 · r-devel

Hi, Couldn't is.unsorted() bail out immediately here (after comparing the first 2 elements): > x <- 20000000:1 > system.time(is.unsorted(x), gcFirst=TRUE) user system elapsed 0.084 0.040 0.124 > x <- 200000000:1 > system.time(is...

paste(character(0), collapse="", recycle0=FALSE) should be ""
Hervé Pagès · May 23, 2020 · r-devel

On 5/22/20 18:12, brodie gaslam wrote: > > FWIW what convinces me is consistency with other aggregating functions applied > to zero length inputs: > > sum(numeric(0)) > ## [1] 0 Right. And 1 is the identity element of multiplication: > prod(numeric...

rggobi not in bin/macosx/universal/contrib/2.6/PACKAGES on CRAN
Hervé Pagès · Sep 25, 2007 · r-devel

Hi, R-2.6 + install.packages() doesn't find rggobi on Mac OS X. The .tgz file is here: http://cran.fhcrc.org/bin/macosx/universal/contrib/2.6/ but it is not listed in the PACKAGES file: http://cran...

.onLoad failing because could not find function "loadMethod"
Hervé Pagès · Oct 14, 2011 · r-devel

On 11-10-14 05:46 PM, Herv? Pag?s wrote: [...] > > I've put 2 toy packages here that illustrate the problem: > > https://rapidshare.com/files/4043144391/pkgA_1.0.tar.gz > > https://rapidshare.com/files/1959508331/pkgB_1.0...

[Bioc-devel] S4 Methods Documentation Convention Triggers Warnings
Hervé Pagès · Jan 29, 2023 · bioc-devel

On 28/01/2023 19:42, Deepayan Sarkar wrote: ... > I'm open to suppressing the warning for \describe items (the warning > is more important for \arguments). Let me know. Hi Deepayan, suppressing the warning for \describe would kind of make...

[Bioc-devel] splots -- svn commit plotScreen.R - CORRECTED
Hervé Pagès · Sep 14, 2006 · r-sig-mac

Oleg Sklyar wrote: > The following modification has been introduced. The code committed to > BioC svn as revision 19830, please update. The tarball will take several > days until the build system runs through. 2 days! splots 0.9.2 should be...

[Bioc-devel] [R-SIG-Mac] splots -- svn commit plotScreen.R - CORRECTED
Hervé Pagès · Sep 14, 2006 · bioc-devel

Oleg Sklyar wrote: > The following modification has been introduced. The code committed to > BioC svn as revision 19830, please update. The tarball will take several > days until the build system runs through. 2 days! splots 0.9.2 should be...

Pb with agrep()
Hervé Pagès · Jan 5, 2006 · r-devel

Martin Maechler wrote: >If you specify max$all as "100%", i.e, as 0.9999 ('< 1' !) everything works >as you expect it: > >agrep(pattern, subject, max = list(ins=0, del=0, sub= 2, all = 0.9999)) >## --> 2 3 4 > > OK...

slots of type "double"
Hervé Pagès · Nov 13, 2007 · r-devel

Hi, Any idea why S4 doesn't allow slots of type "double"? > setClass("A", representation(a="double")) Error in makePrototypeFromClassDef(properties, ClassDef, immediate, where) : in making the prototype for class "A" elements of the prototype failed to match the corresponding...

[Bioc-devel] Bioconductor 2.1 is released
Hervé Pagès · Oct 8, 2007 · bioc-devel

Hi again, Herve Pages wrote: [...] > Known Issues > ============ > > 1. The following software packages are not currently available for Windows: > > exonmap explorase iSNetwork > iSPlot maDB pgUtils > RdbiPgSQL Rgraphviz RMAGEML > RWebServices widgetInvoke Rgraphviz was fixed and is now available on Windows too. However...

[Bioc-devel] BioC wiki down on Tuesday June 20th 2:00pm-2:10pm Pacific Time
Hervé Pagès · Jun 19, 2006 · bioc-devel

Hi BioC developpers, In addition to bioconductor.org, our wiki (http://wiki.fhcrc.org/bioc/) will also be down for maintainance tomorrow Tuesday June 20th from 2:00pm to 2:10pm Pacific Time. Sorry in advance for the inconvenience. Best...

about class(<raster>)
Hervé Pagès · Sep 24, 2025 · r-devel

On 24/09/2025 17:34, Dirk Eddelbuettel wrote: > Herv?, > > Which `as.raster()` did you call here? The one from package `graphics`, or > one from a contributed package such as `raster`, `terra`, ... ? The one from grDevices. It's on the...

[Bioc-devel] bioconductor.org down tomorrow March 11 between noon and 4pm (Seattle time)
Hervé Pagès · Mar 10, 2008 · bioc-devel

Hi, For maintenance purpose, the server hosting bioconductor.org and cran.fhcrc.org will be down tomorrow March 11 between noon and 4pm (Seattle time). During this period of time, there will be no access to our website (http://bioconductor...

[Bioc-devel] issue with .local() hack used in S4 methods
Hervé Pagès · May 20, 2023 · bioc-devel

On 5/19/23 14:37, Martin Maechler wrote: > Could you file a bug at R's bugzilla? > {I know we have too many open bugs there, notably related to S4, > but still you'd do a service to the...

[Bioc-devel] no BioC-devel check results?
Hervé Pagès · Jul 23, 2007 · bioc-devel

Hi Oleg, Build results for BioC devel are back: http://bioconductor.org/checkResults/2.1/bioc-LATEST/ Hopefully, the next report (today at midnight, Seattle time) will include the results for Windows. Sorry for the inconvenience. H. Oleg Sklyar wrote...

[Bioc-devel] .First.lib error in beadarray
Hervé Pagès · Sep 26, 2006 · bioc-devel

Mark Dunning wrote: > Will the version of R on the solaris machine be updated before > today's deadline for packages to pass R CMD check without error? > Otherwise I fear that the error might not be fixed in time > Hi...

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